Variant report

Variant	rs1806438
Chromosome Location	chr10:49798337-49798338
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1345107	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1965169	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2377517	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61838376	0.85[EUR][1000 genomes]
rs61838387	0.84[EUR][1000 genomes]
rs7079932	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs935286	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1046588	chr10:49790254-49806169	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49791400-49798400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:49794400-49810600	Enhancers	Brain Substantia Nigra	brain
3	chr10:49794800-49799200	Enhancers	Brain Hippocampus Middle	brain
4	chr10:49795000-49799400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:49795200-49803800	Enhancers	NHDF-Ad	bronchial
6	chr10:49795600-49798800	Genic enhancers	NHLF	lung
7	chr10:49795800-49798800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:49795800-49798800	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:49795800-49798800	Enhancers	HMEC	breast
10	chr10:49796000-49798400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:49796200-49799200	Enhancers	Fetal Stomach	stomach
12	chr10:49796200-49800600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:49796400-49799000	Enhancers	Brain Angular Gyrus	brain
14	chr10:49796600-49798400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:49796600-49799000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:49796800-49798400	Enhancers	Esophagus	oesophagus
17	chr10:49796800-49798400	Enhancers	NHEK	skin
18	chr10:49796800-49798600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:49796800-49799200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:49796800-49799400	Enhancers	HUVEC	blood vessel
21	chr10:49797000-49798400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:49797000-49798600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:49797200-49798400	Enhancers	Brain Anterior Caudate	brain
24	chr10:49797400-49799400	Enhancers	HSMM	muscle
25	chr10:49797400-49812200	Weak transcription	Right Atrium	heart
26	chr10:49797600-49798600	Enhancers	HSMMtube	muscle
27	chr10:49797600-49798800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chr10:49797800-49798600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:49797800-49799400	Enhancers	NH-A	brain
30	chr10:49797800-49802600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:49798000-49798400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:49798000-49798800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:49798000-49799200	Enhancers	Osteobl	bone
34	chr10:49798000-49799400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:49798000-49799600	Genic enhancers	Muscle Satellite Cultured Cells	--
36	chr10:49798200-49798400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:49798200-49798400	Enhancers	Left Ventricle	heart
38	chr10:49798200-49798400	Enhancers	Stomach Mucosa	stomach

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