Variant report

Variant	rs180715498
Chromosome Location	chr5:15917221-15917222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15913200-15918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:15913200-15918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:15913800-15936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:15914000-15918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:15914000-15918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:15914000-15918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:15914000-15926800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:15914000-15940000	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:15914600-15928200	Weak transcription	Fetal Brain Male	brain
10	chr5:15915000-15919200	Enhancers	Fetal Heart	heart
11	chr5:15915000-15928000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:15915600-15917600	Weak transcription	Left Ventricle	heart
13	chr5:15915600-15918600	Weak transcription	Fetal Lung	lung
14	chr5:15915600-15918600	Weak transcription	Fetal Stomach	stomach
15	chr5:15915600-15918600	Weak transcription	Small Intestine	intestine
16	chr5:15916400-15918400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:15916600-15918600	Weak transcription	Ovary	ovary
18	chr5:15916600-15924800	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links