Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11807536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12068638	0.82[ASN][1000 genomes]
rs12097516	0.82[ASN][1000 genomes]
rs12752351	0.92[ASN][1000 genomes]
rs1833030	0.92[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs2174696	0.81[JPT][hapmap]
rs4656442	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4657424	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs4657425	0.82[ASN][1000 genomes]
rs4657426	0.81[ASN][1000 genomes]
rs4657427	0.85[CHB][hapmap];0.80[CHD][hapmap];0.82[ASN][1000 genomes]
rs4657428	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs4657429	0.82[ASN][1000 genomes]
rs4657431	0.92[ASN][1000 genomes]
rs58462518	0.98[ASN][1000 genomes]
rs59327172	0.82[ASN][1000 genomes]
rs6662349	0.84[CEU][hapmap]
rs7528111	0.81[ASW][hapmap];0.84[LWK][hapmap];0.87[MKK][hapmap]
rs7528546	0.92[ASN][1000 genomes]
rs7530861	0.82[ASN][1000 genomes]
rs7540476	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1807798	B4GALT3	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165244400-165252000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165248800-165256600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:165249000-165250600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:165249000-165250800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:165249000-165250800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:165249400-165250600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:165250000-165251600	Enhancers	Liver	Liver
8	chr1:165250200-165251600	Enhancers	HepG2	liver

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