Variant report

Variant	rs1808038
Chromosome Location	chr4:148393060-148393061
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11100963	0.84[ASN][1000 genomes]
rs11722942	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11727337	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11727397	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11730985	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11731096	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11731097	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11731134	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509416	0.86[ASN][1000 genomes]
rs12642328	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13109203	0.83[ASN][1000 genomes]
rs13109209	0.83[ASN][1000 genomes]
rs13112065	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13127894	0.87[ASN][1000 genomes]
rs13138887	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13144507	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1366688	0.81[ASN][1000 genomes]
rs1400558	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1400559	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1400560	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1517138	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1517139	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1808039	0.96[ASN][1000 genomes]
rs1949375	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1987147	0.86[ASN][1000 genomes]
rs2063936	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34256803	0.84[ASN][1000 genomes]
rs35686091	0.84[ASN][1000 genomes]
rs4631019	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4835081	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4835401	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4835405	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4835407	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6537479	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6810637	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6817469	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6835512	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6840108	0.86[ASN][1000 genomes]
rs6840784	0.87[ASN][1000 genomes]
rs6853791	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs959600	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148383400-148401000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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