Variant report

Variant	rs1808039
Chromosome Location	chr4:148393041-148393042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11100963	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11722878	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11722942	0.81[ASN][1000 genomes]
rs11727337	0.81[ASN][1000 genomes]
rs11727397	0.81[ASN][1000 genomes]
rs11730985	0.81[ASN][1000 genomes]
rs11731134	0.81[ASN][1000 genomes]
rs12509416	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12642328	0.81[ASN][1000 genomes]
rs13109203	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13109209	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13112065	0.81[ASN][1000 genomes]
rs13127894	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13144507	0.83[ASN][1000 genomes]
rs1366688	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1400558	0.81[ASN][1000 genomes]
rs1400559	0.81[ASN][1000 genomes]
rs1400560	0.81[ASN][1000 genomes]
rs1517134	0.81[AFR][1000 genomes]
rs1517138	0.81[ASN][1000 genomes]
rs1517139	0.81[ASN][1000 genomes]
rs1801708	0.88[AFR][1000 genomes]
rs1808038	0.96[ASN][1000 genomes]
rs1949375	0.81[ASN][1000 genomes]
rs1987147	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1996373	0.88[AFR][1000 genomes]
rs2063936	0.81[ASN][1000 genomes]
rs34256803	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35686091	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4835081	0.81[ASN][1000 genomes]
rs4835083	0.88[AFR][1000 genomes]
rs4835084	0.83[AFR][1000 genomes]
rs4835401	0.81[ASN][1000 genomes]
rs4835405	0.81[ASN][1000 genomes]
rs4835407	0.81[ASN][1000 genomes]
rs6537479	0.81[ASN][1000 genomes]
rs6537480	0.88[AFR][1000 genomes]
rs6810637	0.84[ASN][1000 genomes]
rs6840108	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6840784	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9308218	0.88[AFR][1000 genomes]
rs952402	0.88[AFR][1000 genomes]
rs959600	0.81[ASN][1000 genomes]
rs9991584	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148383400-148401000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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