Variant report

Variant	rs180888707
Chromosome Location	chr13:50935655-50935656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50697261..50699908-chr13:50935542..50937568,2	K562	blood:
2	chr13:50698526..50701372-chr13:50933812..50935948,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-9	chr13:50935546-50935899	NONHSAT033838

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv976114	chr13:50935447-50940164	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50930000-50935800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr13:50930200-50939200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:50930200-50939600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:50931600-50939000	Weak transcription	HepG2	liver
5	chr13:50932000-50940800	Weak transcription	Small Intestine	intestine
6	chr13:50932400-50936200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr13:50932400-50936200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr13:50932400-50936400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:50932800-50935800	Weak transcription	Spleen	Spleen
10	chr13:50932800-50936200	Weak transcription	Fetal Brain Female	brain
11	chr13:50932800-50939400	Weak transcription	Gastric	stomach
12	chr13:50932800-50939400	Weak transcription	Pancreas	Pancrea
13	chr13:50932800-50939600	Weak transcription	Fetal Kidney	kidney
14	chr13:50933000-50935800	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:50933000-50935800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:50933000-50936000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:50933200-50936600	Weak transcription	Fetal Heart	heart
18	chr13:50933200-50939200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr13:50933400-50939800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr13:50933400-50944600	Weak transcription	Fetal Lung	lung
21	chr13:50933800-50944000	Weak transcription	Primary B cells from cord blood	blood
22	chr13:50934000-50939600	Weak transcription	Brain Germinal Matrix	brain
23	chr13:50934200-50935800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:50934600-50936000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr13:50934600-50942000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:50934800-50935800	Enhancers	Dnd41	blood
27	chr13:50935000-50936000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr13:50935000-50939400	Weak transcription	Fetal Thymus	thymus
29	chr13:50935200-50936800	Enhancers	Liver	Liver
30	chr13:50935400-50935800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr13:50935400-50936200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr13:50935600-50935800	Bivalent Enhancer	GM12878-XiMat	blood
33	chr13:50935600-50936200	Enhancers	Primary B cells from peripheral blood	blood

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