Variant report

Variant	rs180939920
Chromosome Location	chr2:56071506-56071507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56070321..56072197-chr2:56112589..56114898,2	MCF-7	breast:
2	chr2:56066504..56070179-chr2:56070783..56074906,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3457762	chr2:56070968-56071509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56066800-56082600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:56068600-56071800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:56068800-56072000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:56068800-56072000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:56068800-56072000	Enhancers	Osteobl	bone
6	chr2:56069000-56071600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:56069000-56071600	Enhancers	NHDF-Ad	bronchial
8	chr2:56069000-56071600	Enhancers	NHLF	lung
9	chr2:56069000-56072200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:56069200-56071600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:56069200-56071600	Enhancers	NHEK	skin
12	chr2:56069200-56071800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:56070200-56073000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:56070400-56071600	Enhancers	Stomach Mucosa	stomach
15	chr2:56070400-56072000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr2:56070600-56073000	Weak transcription	Pancreas	Pancrea
17	chr2:56070600-56075400	Weak transcription	HUVEC	blood vessel
18	chr2:56070600-56078400	Weak transcription	Ovary	ovary
19	chr2:56070800-56071800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:56071200-56071600	Enhancers	Hela-S3	cervix
21	chr2:56071200-56072000	Weak transcription	Adipose Nuclei	Adipose
22	chr2:56071400-56072400	Enhancers	A549	lung
23	chr2:56071400-56084000	Weak transcription	HSMM	muscle

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