Variant report

Variant	rs1809406
Chromosome Location	chr4:120377122-120377123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:120376613-120377159	HepG2	liver:	n/a	n/a
2	GABPA	chr4:120377005-120377290	MCF-7	breast:	n/a	n/a
3	ELF1	chr4:120376980-120377195	MCF-7	breast:	n/a	chr4:120377103-120377116
4	SP1	chr4:120376656-120377230	HepG2	liver:	n/a	n/a
5	POLR2A	chr4:120376986-120377271	MCF-7	breast:	n/a	n/a
6	POLR2A	chr4:120376879-120377238	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:120376901-120377184	ECC-1	luminal epithelium:	n/a	n/a
8	MAZ	chr4:120377097-120377123	HepG2	liver:	n/a	n/a
9	HEY1	chr4:120376605-120377209	HepG2	liver:	n/a	n/a
10	POLR2A	chr4:120376746-120377296	PANC-1	pancreas:	n/a	n/a
11	ELF1	chr4:120376964-120377167	HepG2	liver:	n/a	chr4:120377103-120377116
12	POLR2A	chr4:120376797-120377268	MCF-7	breast:	n/a	n/a
13	POLR2A	chr4:120376732-120377179	HepG2	liver:	n/a	n/a
14	POLR2A	chr4:120376906-120377182	HepG2	liver:	n/a	n/a
15	POLR2A	chr4:120376779-120377295	SK-N-SH	brain:	n/a	n/a
16	HEY1	chr4:120375158-120377305	HepG2	liver:	n/a	n/a
17	POLR2A	chr4:120376835-120377198	SK-N-MC	brain:	n/a	n/a
18	POLR2A	chr4:120374208-120377141	GM12892	blood:	n/a	n/a
19	EGR1	chr4:120376982-120377170	MCF-7	breast:	n/a	n/a
20	EGR1	chr4:120376933-120377183	K562	blood:	n/a	n/a
21	SIN3AK20	chr4:120376746-120377192	HepG2	liver:	n/a	n/a
22	POLR2A	chr4:120377005-120377262	MCF-7	breast:	n/a	n/a
23	ELF1	chr4:120376984-120377234	HepG2	liver:	n/a	chr4:120377103-120377116
24	POLR2A	chr4:120376978-120377137	Hela-S3	cervix:	n/a	n/a
25	MXI1	chr4:120376887-120377374	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr4:120374809-120377349	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr4:120374200-120377199	H1-hESC	embryonic stem cell:	n/a	n/a
28	ELF1	chr4:120376999-120377167	K562	blood:	n/a	chr4:120377103-120377116
29	POLR2A	chr4:120374265-120377149	GM12878	blood:	n/a	n/a
30	POLR2A	chr4:120376766-120377133	HepG2	liver:	n/a	n/a
31	POLR2A	chr4:120376929-120377230	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119679216..119681142-chr4:120375525..120377542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245958	TF binding region
ENSG00000250950	TF binding region
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 212 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10004144	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10006525	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10006706	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10006793	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10008459	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10009450	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10009626	0.81[ASN][1000 genomes]
rs10013305	0.81[ASN][1000 genomes]
rs10017335	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10017389	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10018280	0.81[ASN][1000 genomes]
rs10018726	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10019406	0.80[AMR][1000 genomes]
rs10019522	0.80[AMR][1000 genomes]
rs10020027	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10026493	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10026516	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10026736	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10026748	0.89[AMR][1000 genomes]
rs10026952	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10030660	0.81[ASN][1000 genomes]
rs10031483	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10031665	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10032151	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10032158	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10034450	0.81[ASN][1000 genomes]
rs10034623	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1010739	0.81[ASN][1000 genomes]
rs1010740	0.81[ASN][1000 genomes]
rs10518328	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11098524	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098525	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098526	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11098527	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11098530	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098531	0.81[ASN][1000 genomes]
rs1155576	0.81[ASN][1000 genomes]
rs11729521	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11731756	0.81[ASN][1000 genomes]
rs11734241	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11933966	0.81[ASN][1000 genomes]
rs11934314	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11934328	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11934397	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11934940	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935596	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11940028	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11941859	0.80[EUR][1000 genomes]
rs11943877	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11947234	0.81[ASN][1000 genomes]
rs12498539	0.81[ASN][1000 genomes]
rs12498599	0.81[ASN][1000 genomes]
rs12499324	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12502423	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12502909	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12505878	0.90[AMR][1000 genomes]
rs12505953	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507964	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12508504	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12510138	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13107475	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13128602	0.81[ASN][1000 genomes]
rs13145352	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13149407	0.81[ASN][1000 genomes]
rs1383532	0.81[ASN][1000 genomes]
rs1383533	0.81[ASN][1000 genomes]
rs1480931	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1480936	0.81[ASN][1000 genomes]
rs1480939	0.81[ASN][1000 genomes]
rs1480940	0.81[ASN][1000 genomes]
rs1552095	0.81[ASN][1000 genomes]
rs17005535	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17006190	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17008998	0.82[EUR][1000 genomes]
rs17046116	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17046118	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2127821	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2291185	0.81[ASN][1000 genomes]
rs2306455	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2306456	0.81[ASN][1000 genomes]
rs2306457	0.81[ASN][1000 genomes]
rs2389803	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2389809	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28374462	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28394590	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28408407	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28441656	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28444327	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28450134	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28461559	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28479042	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28495013	0.82[AMR][1000 genomes]
rs28499576	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28529639	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28559989	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28567426	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28571712	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28587142	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28587175	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28626372	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28632018	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28655325	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28665282	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28685688	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28712309	0.82[AMR][1000 genomes]
rs28714318	0.82[AMR][1000 genomes]
rs28718422	0.81[ASN][1000 genomes]
rs28735358	0.81[ASN][1000 genomes]
rs28845498	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2892848	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34004415	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34308924	0.81[ASN][1000 genomes]
rs34378623	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34566984	0.81[EUR][1000 genomes]
rs34858317	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34868248	0.81[ASN][1000 genomes]
rs34954036	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35063680	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35111011	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35494005	0.81[EUR][1000 genomes]
rs36040693	0.81[ASN][1000 genomes]
rs3733519	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3733520	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3733523	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3733524	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3733525	0.81[ASN][1000 genomes]
rs3775841	0.80[ASN][1000 genomes]
rs3775844	0.81[ASN][1000 genomes]
rs3775845	0.81[ASN][1000 genomes]
rs3775847	0.81[ASN][1000 genomes]
rs3775849	0.81[ASN][1000 genomes]
rs3775852	0.81[ASN][1000 genomes]
rs3775854	0.81[ASN][1000 genomes]
rs3822190	0.81[ASN][1000 genomes]
rs3822191	0.81[ASN][1000 genomes]
rs3822192	0.81[ASN][1000 genomes]
rs3822194	0.81[ASN][1000 genomes]
rs3822195	0.81[ASN][1000 genomes]
rs4001185	0.82[AMR][1000 genomes]
rs4001190	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4001191	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4577559	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56270433	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56372521	0.84[AMR][1000 genomes]
rs58452170	0.81[ASN][1000 genomes]
rs59182778	0.80[AMR][1000 genomes]
rs6534139	0.81[ASN][1000 genomes]
rs66506550	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67265404	0.81[EUR][1000 genomes]
rs6822679	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6834796	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6835635	0.81[ASN][1000 genomes]
rs6837828	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6838814	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6842762	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6847818	0.81[ASN][1000 genomes]
rs6848389	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6849171	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6849561	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6853998	0.81[ASN][1000 genomes]
rs6858592	0.81[ASN][1000 genomes]
rs6858777	0.81[ASN][1000 genomes]
rs71614422	0.83[EUR][1000 genomes]
rs71614438	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71614443	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71614444	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71614448	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71614449	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71629403	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71629404	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73842633	0.82[EUR][1000 genomes]
rs7436506	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7654529	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654546	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7654587	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7656252	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7659336	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7659501	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7659551	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7664458	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7678400	0.81[ASN][1000 genomes]
rs7680704	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7681214	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7681544	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7681978	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7687843	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7688613	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7688802	0.81[ASN][1000 genomes]
rs7695620	0.81[ASN][1000 genomes]
rs7699064	0.81[ASN][1000 genomes]
rs9683709	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9685777	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9685784	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9759478	0.80[ASN][1000 genomes]
rs9760442	0.80[ASN][1000 genomes]
rs9993199	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9994730	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9994810	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9997631	0.81[ASN][1000 genomes]
rs9998585	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv879841	chr4:120244085-120388406	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv879842	chr4:120244085-120424087	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv427694	chr4:120250511-120501728	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	esv2538163	chr4:120252854-120388678	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv879843	chr4:120326323-120502461	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv879844	chr4:120341296-120449810	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv879846	chr4:120341296-120491714	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv879845	chr4:120341296-120502461	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv879847	chr4:120371729-120450159	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1809406	FLJ14186///LOC284701///LOC441124///LOC728624	Cis_1M	lymphoblastoid	RTeQTL
rs1809406	RP11-33B1.1	cis	Thyroid	GTEx
rs1809406	LOC645513	Cis_1M	lymphoblastoid	RTeQTL
rs1809406	RP11-33B1.1	cis	Esophagus Mucosa	GTEx
rs1809406	RP11-384K6.6	cis	Whole Blood	GTEx
rs1809406	RP11-33B1.1	cis	lung	GTEx
rs1809406	RP11-33B1.4	cis	Whole Blood	GTEx
rs1809406	RP11-33B1.1	cis	Nerve Tibial	GTEx
rs1809406	RP11-33B1.1	cis	Whole Blood	GTEx
rs1809406	RP11-33B1.1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120374800-120377400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:120374800-120377400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:120375000-120377200	Active TSS	A549	lung
4	chr4:120375000-120377400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:120375000-120377400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:120375000-120377400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:120375000-120377400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:120375200-120377200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr4:120375200-120377200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:120375200-120377200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:120375200-120377200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:120375200-120377200	Active TSS	Brain Angular Gyrus	brain
13	chr4:120375200-120377200	Active TSS	Brain Anterior Caudate	brain
14	chr4:120375200-120377200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr4:120375200-120377200	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr4:120375200-120377200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr4:120375200-120377200	Active TSS	Fetal Intestine Small	intestine
18	chr4:120375200-120377200	Active TSS	Right Atrium	heart
19	chr4:120375200-120377200	Active TSS	Right Ventricle	heart
20	chr4:120375200-120377200	Active TSS	NH-A	brain
21	chr4:120375200-120377400	Active TSS	H1 Cell Line	embryonic stem cell
22	chr4:120375200-120377400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:120375200-120377400	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr4:120375200-120377400	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr4:120375200-120377400	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr4:120375200-120377400	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr4:120375200-120377400	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr4:120375200-120377400	Active TSS	Brain Germinal Matrix	brain
29	chr4:120375200-120377400	Active TSS	Colonic Mucosa	Colon
30	chr4:120375200-120377400	Active TSS	Fetal Brain Female	brain
31	chr4:120375200-120377400	Active TSS	Fetal Intestine Large	intestine
32	chr4:120375200-120377400	Active TSS	Fetal Kidney	kidney
33	chr4:120375200-120377400	Active TSS	Ovary	ovary
34	chr4:120375200-120377400	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr4:120375200-120377400	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr4:120375200-120377400	Active TSS	Rectal Smooth Muscle	rectum
37	chr4:120375200-120377400	Active TSS	Stomach Smooth Muscle	stomach
38	chr4:120375200-120377400	Active TSS	Thymus	Thymus
39	chr4:120375200-120377400	Active TSS	GM12878-XiMat	blood
40	chr4:120375200-120377400	Active TSS	Hela-S3	cervix
41	chr4:120375200-120377400	Active TSS	HSMM	muscle
42	chr4:120375200-120377400	Active TSS	HUVEC	blood vessel
43	chr4:120375200-120377400	Active TSS	K562	blood
44	chr4:120375200-120377400	Active TSS	NHLF	lung
45	chr4:120375200-120377400	Active TSS	Osteobl	bone
46	chr4:120375200-120377600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr4:120375200-120377600	Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr4:120375200-120377600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:120375200-120377600	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr4:120375200-120377600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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