Variant report

Variant	rs1809414
Chromosome Location	chr15:79028120-79028121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11072793	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11072794	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072799	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629639	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11629824	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11633152	0.82[EUR][1000 genomes]
rs11633170	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11633519	0.80[ASN][1000 genomes]
rs11634628	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11852887	0.93[EUR][1000 genomes]
rs11852909	0.97[EUR][1000 genomes]
rs11856441	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12899201	0.81[EUR][1000 genomes]
rs12899940	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12901228	0.95[EUR][1000 genomes]
rs12904489	0.85[EUR][1000 genomes]
rs12906977	0.86[EUR][1000 genomes]
rs12907207	0.87[EUR][1000 genomes]
rs12907432	0.87[EUR][1000 genomes]
rs12907536	0.87[EUR][1000 genomes]
rs12913779	0.87[EUR][1000 genomes]
rs1383634	0.97[EUR][1000 genomes]
rs1383635	0.97[EUR][1000 genomes]
rs1809412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1814880	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1825086	0.97[EUR][1000 genomes]
rs1904920	0.93[EUR][1000 genomes]
rs2017091	0.87[EUR][1000 genomes]
rs2017297	0.81[EUR][1000 genomes]
rs2219939	0.97[EUR][1000 genomes]
rs3971868	0.81[ASN][1000 genomes]
rs4887078	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4887085	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs71402966	0.84[EUR][1000 genomes]
rs7176070	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs755998	0.87[EUR][1000 genomes]
rs8030090	0.85[EUR][1000 genomes]
rs8030335	0.85[EUR][1000 genomes]
rs899997	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9888691	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79028000-79030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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