Variant report

Variant	rs1809415
Chromosome Location	chr15:79028201-79028202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1114829	0.82[EUR][1000 genomes]
rs11856441	0.92[ASN][1000 genomes]
rs1814880	0.85[ASN][1000 genomes]
rs2291196	0.83[ASN][1000 genomes]
rs2869552	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2869553	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2869571	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3861181	0.88[ASN][1000 genomes]
rs58717592	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59888683	0.86[ASN][1000 genomes]
rs59934757	0.86[ASN][1000 genomes]
rs62010552	0.82[EUR][1000 genomes]
rs62010554	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62012588	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495318	0.82[EUR][1000 genomes]
rs7163236	0.83[EUR][1000 genomes]
rs7170552	0.82[EUR][1000 genomes]
rs72625802	0.82[EUR][1000 genomes]
rs8039600	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79028000-79030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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