Variant report

Variant	rs181158597
Chromosome Location	chr5:125049193-125049194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv534468	chr5:124943170-125634960	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv521940	chr5:125049170-125092500	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:125021800-125055400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:125045000-125050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:125048200-125049400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:125048200-125049400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:125048600-125049200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:125048600-125049400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:125048600-125049400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:125048600-125049600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:125048800-125049200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:125048800-125049200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:125048800-125049200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:125048800-125049200	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:125048800-125049400	Enhancers	Brain Germinal Matrix	brain
14	chr5:125048800-125049400	Enhancers	Brain Substantia Nigra	brain
15	chr5:125049000-125049200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:125049000-125049200	Enhancers	Brain Angular Gyrus	brain
17	chr5:125049000-125049200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr5:125049000-125049200	ZNF genes & repeats	Pancreas	Pancrea
19	chr5:125049000-125049800	Enhancers	Gastric	stomach
20	chr5:125049000-125052600	Weak transcription	HepG2	liver

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