Variant report

Variant	rs1812401
Chromosome Location	chr10:25589765-25589766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10741075	0.92[CHB][hapmap]
rs10741077	0.86[CHB][hapmap]
rs10828770	1.00[CHB][hapmap]
rs10828774	0.92[CHB][hapmap]
rs10828775	0.84[CHB][hapmap]
rs10828776	0.85[CEU][hapmap]
rs10828777	0.84[CHB][hapmap]
rs10828778	0.86[CHB][hapmap]
rs1122776	0.84[CHB][hapmap]
rs1329258	0.85[CEU][hapmap]
rs1329259	0.86[CHB][hapmap]
rs1329263	0.86[CHB][hapmap]
rs1329265	0.86[CHB][hapmap]
rs1334057	0.83[CEU][hapmap]
rs1340002	0.84[CHB][hapmap]
rs1341964	0.93[CHB][hapmap]
rs1341966	0.93[CHB][hapmap]
rs1410932	0.93[CHB][hapmap]
rs1413396	0.83[CEU][hapmap]
rs1413397	0.92[CHB][hapmap]
rs1413398	0.85[CEU][hapmap];0.86[ASN][1000 genomes]
rs1576317	0.86[CHB][hapmap]
rs1576319	0.85[CEU][hapmap]
rs1590836	0.93[CHB][hapmap]
rs1591249	0.86[CHB][hapmap]
rs1591250	0.92[CHB][hapmap]
rs1612200	0.86[CHB][hapmap]
rs1628986	0.84[CHB][hapmap]
rs1754251	0.84[CHB][hapmap]
rs1754253	0.84[CHB][hapmap]
rs1754260	0.86[CHB][hapmap]
rs1754268	0.86[CHB][hapmap]
rs1760716	0.92[CHB][hapmap]
rs1760718	0.92[CHB][hapmap]
rs1760727	0.84[CHB][hapmap]
rs1760728	0.84[CHB][hapmap]
rs1760733	0.86[CHB][hapmap]
rs1760750	0.93[CEU][hapmap];0.81[CHB][hapmap]
rs1760757	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1760758	0.93[CHB][hapmap]
rs1760759	0.93[CHB][hapmap]
rs1760762	0.86[CHB][hapmap]
rs1760763	0.86[CHB][hapmap]
rs1760766	0.86[CHB][hapmap]
rs1760767	0.84[CHB][hapmap]
rs1773608	0.86[CHB][hapmap]
rs1773612	0.86[CHB][hapmap]
rs1773614	0.86[CHB][hapmap]
rs1773615	0.83[CEU][hapmap]
rs1773616	0.84[CHB][hapmap]
rs1773617	0.86[CHB][hapmap]
rs1773618	0.86[CHB][hapmap]
rs1773622	0.85[CHB][hapmap]
rs1773623	0.86[CHB][hapmap]
rs1773624	0.85[CEU][hapmap]
rs1773625	0.84[CHB][hapmap]
rs1773631	0.85[CEU][hapmap]
rs1773649	1.00[CHB][hapmap]
rs1773650	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1854471	0.85[CEU][hapmap]
rs1855461	0.86[CHB][hapmap]
rs1855462	0.93[CEU][hapmap];0.81[CHB][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2262990	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2795044	0.92[CHB][hapmap]
rs2807248	1.00[CHB][hapmap]
rs2807250	0.92[CHB][hapmap]
rs2807253	1.00[CHB][hapmap]
rs2807255	0.92[CHB][hapmap]
rs4351726	0.86[CHB][hapmap]
rs4405201	0.85[CEU][hapmap]
rs489052	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs489186	0.93[CHB][hapmap]
rs495338	1.00[CHB][hapmap]
rs495456	1.00[CHB][hapmap]
rs509285	1.00[CHB][hapmap]
rs516071	1.00[CHB][hapmap]
rs532538	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs539357	0.84[CEU][hapmap]
rs541206	1.00[CHB][hapmap]
rs543850	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs545616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545905	0.92[CEU][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs558947	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs564371	0.92[CEU][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs573812	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs577382	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7079892	0.86[CHB][hapmap]
rs768540	0.85[CEU][hapmap]
rs824144	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs824145	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs824146	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs824147	0.92[CHB][hapmap]
rs824153	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs824590	0.85[CHB][hapmap]
rs824592	0.92[CHB][hapmap]
rs824597	0.84[CHB][hapmap]
rs824598	0.86[CHB][hapmap]
rs862192	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs961027	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25582000-25592000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25588800-25589800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:25589000-25589800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:25589200-25589800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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