Variant report

Variant	rs181283055
Chromosome Location	chr13:111134877-111134878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111134838..111136595-chr13:111159284..111162082,2	MCF-7	breast:
2	chr13:111132025..111133976-chr13:111134676..111137349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232814	Chromatin interaction
ENSG00000134871	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv430604	chr13:111095999-111156999	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv832720	chr13:111100235-111295993	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1039297	chr13:111101507-111138863	Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv541923	chr13:111101507-111138863	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1046291	chr13:111125747-111257861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1045143	chr13:111126822-111242791	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	esv1814924	chr13:111130548-111135120	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1819523	chr13:111130548-111135120	Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1825789	chr13:111130548-111135120	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1843771	chr13:111130548-111135120	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv1805325	chr13:111130748-111135050	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1819171	chr13:111130748-111135050	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv1846472	chr13:111130748-111135050	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3405709	chr13:111131251-111135749	Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv1828459	chr13:111131969-111135498	Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv901009	chr13:111134780-111176393	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111078200-111136800	Weak transcription	Colonic Mucosa	Colon
2	chr13:111105800-111138000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:111108200-111138400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:111108600-111138200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:111108600-111149200	Strong transcription	Fetal Stomach	stomach
6	chr13:111108600-111150600	Weak transcription	NHDF-Ad	bronchial
7	chr13:111108800-111148800	Weak transcription	Brain Angular Gyrus	brain
8	chr13:111108800-111152200	Strong transcription	Fetal Intestine Small	intestine
9	chr13:111109000-111158800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:111109600-111155800	Strong transcription	Fetal Intestine Large	intestine
11	chr13:111109600-111158800	Strong transcription	Ovary	ovary
12	chr13:111109800-111152600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:111109800-111168000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:111114200-111138800	Strong transcription	Aorta	Aorta
15	chr13:111117200-111152000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:111119000-111142600	Weak transcription	Stomach Mucosa	stomach
17	chr13:111119000-111143600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:111119200-111138200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:111119200-111150400	Weak transcription	Brain Anterior Caudate	brain
20	chr13:111119200-111159200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:111119600-111139800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:111119600-111160400	Weak transcription	Brain Germinal Matrix	brain
23	chr13:111124200-111137400	Strong transcription	NH-A	brain
24	chr13:111124200-111144600	Weak transcription	Liver	Liver
25	chr13:111124400-111136200	Strong transcription	HSMM	muscle
26	chr13:111124400-111139000	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr13:111124400-111152000	Strong transcription	Osteobl	bone
28	chr13:111124400-111167400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:111125200-111136800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr13:111125600-111157800	Weak transcription	Small Intestine	intestine
31	chr13:111127400-111147400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr13:111127400-111148200	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:111127400-111148600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr13:111127600-111136800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:111127600-111144600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr13:111127600-111148600	Strong transcription	Lung	lung
37	chr13:111127600-111153000	Weak transcription	Brain Substantia Nigra	brain
38	chr13:111127600-111156200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr13:111127800-111147800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr13:111128600-111137200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr13:111128800-111146000	Strong transcription	Fetal Lung	lung
42	chr13:111129000-111138000	Weak transcription	A549	lung
43	chr13:111129200-111142400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr13:111130000-111137200	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr13:111130200-111138000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:111130600-111137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:111130600-111137800	Weak transcription	Fetal Heart	heart
48	chr13:111130600-111139400	Strong transcription	Spleen	Spleen
49	chr13:111130600-111155400	Strong transcription	Left Ventricle	heart
50	chr13:111130800-111138400	Strong transcription	Rectal Smooth Muscle	rectum

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