Variant report

Variant	rs1814764
Chromosome Location	chr15:76496977-76496978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76496662..76498541-chr15:76601161..76604084,2	MCF-7	breast:
2	chr15:76495383..76497308-chr15:76500785..76502809,2	K562	blood:
3	chr15:76493299..76496201-chr15:76496917..76499323,4	K562	blood:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10220790	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12708522	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1533600	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1810347	1.00[AMR][1000 genomes]
rs1875886	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1878877	1.00[ASW][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2037306	1.00[AMR][1000 genomes]
rs2176622	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2244050	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2245180	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2247488	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2250805	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2405329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2405330	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2405332	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456030	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456032	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456034	1.00[AMR][1000 genomes]
rs2456035	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2456036	1.00[AMR][1000 genomes]
rs2456037	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456038	1.00[AMR][1000 genomes]
rs2456039	1.00[AMR][1000 genomes]
rs2456043	0.83[AMR][1000 genomes]
rs2456044	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456056	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456059	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2456062	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456064	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456068	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456069	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456077	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460141	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2460143	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2460145	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460149	1.00[AMR][1000 genomes]
rs2460157	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2460159	1.00[AMR][1000 genomes]
rs2469209	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469217	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469218	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2469219	1.00[AMR][1000 genomes]
rs2469220	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469223	1.00[AMR][1000 genomes]
rs2469536	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469537	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469540	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469545	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469546	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469549	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469550	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469551	1.00[AMR][1000 genomes]
rs2469553	1.00[AMR][1000 genomes]
rs2469561	0.86[AFR][1000 genomes]
rs2469571	1.00[AMR][1000 genomes]
rs2469572	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469574	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs284887	1.00[AMR][1000 genomes]
rs284888	1.00[AMR][1000 genomes]
rs284889	1.00[AMR][1000 genomes]
rs284890	1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs2938692	1.00[AMR][1000 genomes]
rs2938693	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2944380	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4886797	1.00[AMR][1000 genomes]
rs6495202	1.00[AMR][1000 genomes]
rs7164815	1.00[AMR][1000 genomes]
rs8040818	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs937731	1.00[AMR][1000 genomes]
rs937734	1.00[MEX][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76484000-76498600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:76484000-76500800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:76484200-76498200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:76485400-76498400	Weak transcription	Fetal Brain Female	brain
5	chr15:76486800-76503000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:76487000-76498200	Weak transcription	Primary T cells from cord blood	blood
8	chr15:76489000-76498200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:76489400-76498000	Weak transcription	Brain Germinal Matrix	brain
10	chr15:76489400-76498800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:76489400-76502800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:76489600-76498200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:76489600-76498400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:76489600-76498600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:76489600-76499800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:76489600-76500000	Weak transcription	Fetal Lung	lung
18	chr15:76489600-76501800	Weak transcription	GM12878-XiMat	blood
19	chr15:76489600-76503000	Weak transcription	Small Intestine	intestine
20	chr15:76489800-76498800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:76490000-76503600	Weak transcription	HUVEC	blood vessel
22	chr15:76490200-76498000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:76490200-76498200	Weak transcription	Lung	lung
24	chr15:76490400-76497000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:76490400-76498200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:76490400-76501600	Weak transcription	Primary B cells from cord blood	blood
27	chr15:76490600-76498600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:76491200-76497400	Weak transcription	Gastric	stomach
29	chr15:76491200-76500600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:76491400-76502800	Weak transcription	HMEC	breast
31	chr15:76491600-76498200	Weak transcription	Hela-S3	cervix
32	chr15:76491800-76497200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:76491800-76498000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:76491800-76498000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:76491800-76498000	Weak transcription	NHEK	skin
36	chr15:76491800-76498600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:76491800-76500400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:76492000-76497400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:76492000-76498000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:76492000-76498400	Weak transcription	Brain Substantia Nigra	brain
41	chr15:76492000-76500000	Weak transcription	Fetal Muscle Leg	muscle
42	chr15:76492000-76500000	Weak transcription	HepG2	liver
43	chr15:76492000-76500400	Weak transcription	Colonic Mucosa	Colon
44	chr15:76492000-76500400	Weak transcription	Right Atrium	heart
45	chr15:76492000-76502000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:76492000-76502000	Weak transcription	Aorta	Aorta
47	chr15:76492000-76502000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:76492000-76503600	Weak transcription	NHDF-Ad	bronchial
49	chr15:76492000-76509600	Weak transcription	K562	blood
50	chr15:76492200-76498200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links