Variant report

Variant	rs181544142
Chromosome Location	chr1:93425923-93425924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93296297..93299381-chr1:93425183..93428047,4	K562	blood:
2	chr1:93324139..93325155-chr1:93425615..93426899,9	MCF-7	breast:
3	chr1:93425058..93429733-chr1:93431759..93435608,8	K562	blood:
4	chr1:93409434..93411659-chr1:93423338..93426325,2	K562	blood:
5	chr1:93378943..93379622-chr1:93425899..93426864,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252121	Chromatin interaction
ENSG00000122406	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	esv3339713	chr1:93425789-93428737	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93409600-93426000	Weak transcription	Lung	lung
2	chr1:93410600-93426000	Weak transcription	Left Ventricle	heart
3	chr1:93423200-93426200	Weak transcription	Gastric	stomach
4	chr1:93423200-93426200	Weak transcription	Spleen	Spleen
5	chr1:93425200-93426000	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr1:93425200-93428000	Active TSS	Brain Hippocampus Middle	brain
7	chr1:93425200-93428000	Active TSS	NHDF-Ad	bronchial
8	chr1:93425200-93428200	Active TSS	Liver	Liver
9	chr1:93425200-93428200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr1:93425200-93428200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:93425200-93428200	Active TSS	Brain Substantia Nigra	brain
12	chr1:93425400-93426000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:93425400-93426200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr1:93425400-93428200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr1:93425400-93428200	Active TSS	Brain Angular Gyrus	brain
16	chr1:93425400-93428200	Active TSS	Brain Anterior Caudate	brain
17	chr1:93425600-93426000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:93425600-93426000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr1:93425600-93426000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:93425600-93426000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:93425600-93426000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:93425600-93426000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr1:93425600-93426000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:93425600-93426000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr1:93425600-93426000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr1:93425600-93426000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr1:93425600-93426000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr1:93425600-93426000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:93425600-93426000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr1:93425600-93426000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr1:93425600-93426000	Flanking Active TSS	Fetal Heart	heart
32	chr1:93425600-93426000	Flanking Active TSS	Fetal Kidney	kidney
33	chr1:93425600-93426000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr1:93425600-93426000	Enhancers	Small Intestine	intestine
35	chr1:93425600-93426000	Enhancers	Stomach Mucosa	stomach
36	chr1:93425600-93426000	Flanking Active TSS	Thymus	Thymus
37	chr1:93425600-93426000	Flanking Active TSS	A549	lung
38	chr1:93425600-93426000	Flanking Active TSS	HepG2	liver
39	chr1:93425600-93426000	Flanking Active TSS	NHLF	lung
40	chr1:93425600-93426200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:93425600-93426200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr1:93425600-93426200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:93425600-93426200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr1:93425600-93426400	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr1:93425600-93426400	Flanking Active TSS	Primary T cells from cord blood	blood
46	chr1:93425600-93426400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr1:93425600-93426400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:93425600-93426400	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr1:93425600-93426400	Flanking Active TSS	Fetal Thymus	thymus
50	chr1:93425600-93426400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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