Variant report
Variant | rs1815595 |
---|---|
Chromosome Location | chr14:38951014-38951015 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11157003 | 0.88[ASN][1000 genomes] |
rs11622251 | 0.82[ASN][1000 genomes] |
rs1168566 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12435069 | 0.90[ASN][1000 genomes] |
rs12588539 | 0.94[ASN][1000 genomes] |
rs17107987 | 0.82[EUR][1000 genomes] |
rs17107995 | 0.83[EUR][1000 genomes] |
rs1815594 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1815596 | 1.00[ASN][1000 genomes] |
rs2415478 | 0.83[EUR][1000 genomes] |
rs2415482 | 0.87[ASN][1000 genomes] |
rs2899873 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4390500 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4570744 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4901908 | 0.94[ASN][1000 genomes] |
rs60658845 | 0.83[EUR][1000 genomes] |
rs61486868 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6650500 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs67146678 | 0.83[EUR][1000 genomes] |
rs67402173 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs67712964 | 0.83[EUR][1000 genomes] |
rs7157738 | 0.83[EUR][1000 genomes] |
rs7159353 | 0.83[EUR][1000 genomes] |
rs72683076 | 0.83[EUR][1000 genomes] |
rs72685131 | 0.83[EUR][1000 genomes] |
rs8017551 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs8020485 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs913734 | 0.83[EUR][1000 genomes] |
rs913735 | 0.83[EUR][1000 genomes] |
rs913736 | 0.83[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533235 | chr14:38558180-39117391 | Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | esv2754119 | chr14:38825349-38988849 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv901655 | chr14:38887881-39019800 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv1041332 | chr14:38934056-38951014 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
5 | nsv564410 | chr14:38944821-39038281 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv1037223 | chr14:38950249-39044313 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv1038162 | chr14:38950615-39033944 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:38949200-38975200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr14:38950800-38952200 | Enhancers | Hela-S3 | cervix |
3 | chr14:38951000-38951600 | Enhancers | NHLF | lung |