Variant report

Variant	rs1817970
Chromosome Location	chr4:143364802-143364803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143364640..143366208-chr4:143371293..143374256,2	MCF-7	breast:
2	chr4:143363779..143366801-chr4:143367868..143370229,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10008498	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10011782	0.84[CEU][hapmap];0.90[AMR][1000 genomes]
rs10015271	0.86[ASN][1000 genomes]
rs12108640	0.90[AMR][1000 genomes]
rs1391099	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1425531	0.84[CEU][hapmap];0.90[AMR][1000 genomes]
rs1425533	0.84[CEU][hapmap]
rs1425536	0.84[CEU][hapmap]
rs1425537	0.84[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1489581	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17016163	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17016175	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17016195	0.81[ASN][1000 genomes]
rs17016306	0.84[CEU][hapmap]
rs1834391	0.87[AMR][1000 genomes]
rs2113997	0.84[CEU][hapmap]
rs2322795	0.84[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs2874841	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2874865	0.90[AMR][1000 genomes]
rs28822497	0.82[AMR][1000 genomes]
rs3844178	0.85[AMR][1000 genomes]
rs3863128	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3913163	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3913164	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs3913165	0.85[ASN][1000 genomes]
rs4956444	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4975308	0.83[AMR][1000 genomes]
rs67960473	0.81[ASN][1000 genomes]
rs6822263	0.81[ASN][1000 genomes]
rs713071	0.85[AMR][1000 genomes]
rs7662794	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7672965	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs7687147	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7695918	0.80[ASN][1000 genomes]
rs9308151	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs976564	0.90[AMR][1000 genomes]
rs979511	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
3	chr4:143355800-143367600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:143357200-143365600	Weak transcription	Thymus	Thymus
5	chr4:143357400-143371200	Weak transcription	Aorta	Aorta
6	chr4:143357600-143367800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:143364800-143365200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links