Variant report

Variant	rs181801437
Chromosome Location	chr5:59947971-59947972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr5:59947971-59948512	MCF-7	breast:	n/a	n/a
2	POLR2A	chr5:59947421-59948512	K562	blood:	n/a	n/a
3	CEBPB	chr5:59947819-59948439	MCF-7	breast:	n/a	chr5:59948192-59948203
4	GATA3	chr5:59947934-59948451	SK-N-SH	brain:	n/a	n/a
5	MAFK	chr5:59947791-59948401	IMR90	lung:	n/a	n/a
6	PBX3	chr5:59947939-59948447	SK-N-SH	brain:	n/a	n/a
7	JUND	chr5:59947923-59948557	SK-N-SH	brain:	n/a	chr5:59948263-59948274
8	JUN	chr5:59947935-59948476	K562	blood:	n/a	n/a
9	CEBPB	chr5:59947835-59948505	MCF-7	breast:	n/a	chr5:59948192-59948203
10	JUND	chr5:59947887-59948606	SK-N-SH	brain:	n/a	chr5:59948263-59948274
11	JUND	chr5:59947932-59948469	SK-N-SH	brain:	n/a	chr5:59948263-59948274
12	CEBPB	chr5:59947390-59948442	IMR90	lung:	n/a	chr5:59948192-59948203
13	FOSL2	chr5:59947940-59948567	SK-N-SH	brain:	n/a	n/a
14	ZNF217	chr5:59947866-59948352	MCF-7	breast:	n/a	n/a
15	RFX5	chr5:59947684-59948688	SK-N-SH	brain:	n/a	n/a
16	RFX5	chr5:59947686-59948672	IMR90	lung:	n/a	n/a
17	FOSL2	chr5:59947962-59948478	MCF-7	breast:	n/a	n/a
18	CEBPB	chr5:59947859-59948500	A549	lung:	n/a	chr5:59948192-59948203

Variant related genes	Relation type
DEPDC1B	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv492277	chr5:59905195-60180834	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv968916	chr5:59944877-59962647	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv436477	chr5:59946381-59952080	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3469266	chr5:59947655-59949357	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3469265	chr5:59947707-59949341	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3469264	chr5:59947720-59949292	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv5002	chr5:59947755-59949312	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3469267	chr5:59947781-59949270	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59926400-59967800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:59929400-59954600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:59929600-59948000	Weak transcription	NHEK	skin
4	chr5:59933400-59965200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:59933600-59981000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:59936600-59961400	Weak transcription	Thymus	Thymus
7	chr5:59936800-59961800	Weak transcription	Fetal Thymus	thymus
8	chr5:59940600-59948000	Weak transcription	K562	blood
9	chr5:59940600-59950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:59942800-59952000	Weak transcription	Dnd41	blood
11	chr5:59942800-59961600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:59943400-59952400	Weak transcription	Placenta	Placenta
13	chr5:59943400-59977000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:59943800-59952600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:59944400-59952400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:59945000-59961800	Weak transcription	HepG2	liver
17	chr5:59946400-59952400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:59947200-59948600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:59947400-59948400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr5:59947400-59948800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:59947400-59949000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:59947600-59948200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:59947600-59948200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:59947600-59948200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr5:59947600-59948200	ZNF genes & repeats	A549	lung
26	chr5:59947600-59948200	Enhancers	HMEC	breast
27	chr5:59947600-59948600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:59947800-59948000	Flanking Active TSS	NHLF	lung
29	chr5:59947800-59948200	Enhancers	H9 Cell Line	embryonic stem cell
30	chr5:59947800-59948200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:59947800-59948200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:59947800-59948200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:59947800-59948200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:59947800-59948200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr5:59947800-59948200	Flanking Active TSS	NH-A	brain
36	chr5:59947800-59948200	Flanking Active TSS	NHDF-Ad	bronchial
37	chr5:59947800-59948200	Flanking Active TSS	Osteobl	bone
38	chr5:59947800-59948400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:59947800-59948600	Enhancers	HSMM	muscle

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