Variant report

Variant	rs181847683
Chromosome Location	chr6:13225881-13225882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13224141..13226448-chr6:13237492..13239981,3	K562	blood:
2	chr6:13219509..13222376-chr6:13224285..13225985,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432849	chr6:13225077-13253733	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
3	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
6	chr6:13208400-13230200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:13212400-13229800	Weak transcription	Right Ventricle	heart
8	chr6:13213400-13230000	Weak transcription	Fetal Brain Female	brain
9	chr6:13214000-13227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:13217800-13230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:13217800-13230000	Weak transcription	Spleen	Spleen
12	chr6:13217800-13242400	Weak transcription	Pancreas	Pancrea
13	chr6:13218200-13227800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:13218200-13230200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:13218200-13235000	Weak transcription	Adipose Nuclei	Adipose
16	chr6:13218400-13241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:13218600-13227800	Weak transcription	Left Ventricle	heart
18	chr6:13218600-13230000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:13218600-13234400	Weak transcription	HSMM	muscle
20	chr6:13218800-13228200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:13218800-13229800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:13218800-13230200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:13219000-13230000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:13219800-13229600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:13220400-13228400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:13221400-13228400	Weak transcription	Brain Germinal Matrix	brain
27	chr6:13221400-13230000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:13223200-13232200	Weak transcription	Lung	lung
29	chr6:13224600-13231800	Weak transcription	Fetal Heart	heart
30	chr6:13224800-13227800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:13225000-13226200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:13225000-13226200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:13225400-13228200	Weak transcription	Aorta	Aorta
34	chr6:13225800-13227000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links