Variant report

Variant	rs182198456
Chromosome Location	chr8:10199673-10199674
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10191950..10195260-chr8:10197828..10201461,4	MCF-7	breast:
2	chr8:10192939..10195509-chr8:10197374..10200259,2	K562	blood:

Variant related genes	Relation type
ENSG00000249848	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:10192600-10282400	Weak transcription	Gastric	stomach
3	chr8:10192800-10206400	Weak transcription	Thymus	Thymus
4	chr8:10193000-10215400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
6	chr8:10193200-10203800	Weak transcription	Right Atrium	heart
7	chr8:10193400-10202400	Weak transcription	Right Ventricle	heart
8	chr8:10193600-10200600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:10193600-10202800	Weak transcription	Brain Anterior Caudate	brain
10	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:10196000-10200000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:10196000-10200000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:10196000-10200800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr8:10196800-10200000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:10196800-10208000	Weak transcription	Adipose Nuclei	Adipose
16	chr8:10196800-10214200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:10196800-10228000	Weak transcription	Liver	Liver
18	chr8:10197000-10200000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:10197800-10200200	Weak transcription	Fetal Brain Female	brain
20	chr8:10197800-10200400	Weak transcription	Fetal Brain Male	brain
21	chr8:10198400-10206400	Weak transcription	Primary T cells from cord blood	blood
22	chr8:10198800-10199800	Enhancers	NHEK	skin
23	chr8:10198800-10202000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:10199000-10200600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:10199000-10201800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr8:10199400-10199800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:10199400-10199800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:10199400-10200400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:10199400-10201800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:10199600-10200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr8:10199600-10201400	Weak transcription	Aorta	Aorta
32	chr8:10199600-10203600	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:10199600-10206800	Weak transcription	Fetal Thymus	thymus

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