Variant report

Variant	rs1829365
Chromosome Location	chr2:181885621-181885622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10171108	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10171998	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10187842	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10930948	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10930950	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11692072	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12473091	0.84[EUR][1000 genomes]
rs12621277	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12989967	0.93[EUR][1000 genomes]
rs13019038	0.84[ASN][1000 genomes]
rs13029368	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4346343	0.82[ASN][1000 genomes]
rs4366861	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4510177	0.85[ASN][1000 genomes]
rs4595925	0.85[ASN][1000 genomes]
rs4667005	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4667008	0.89[AFR][1000 genomes]
rs4990275	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6433878	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6433879	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6433883	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6704750	0.83[ASN][1000 genomes]
rs6706565	0.85[ASN][1000 genomes]
rs6731268	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6735373	0.85[ASN][1000 genomes]
rs6744130	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6745190	0.84[ASN][1000 genomes]
rs7349232	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7371639	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7559803	0.89[AFR][1000 genomes]
rs9808318	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:181871000-181886600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:181873400-181901000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:181873600-181887800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:181873600-181889600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:181883400-181886800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:181884800-181886000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:181885000-181885800	Enhancers	Brain Angular Gyrus	brain
11	chr2:181885000-181890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:181885600-181885800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:181885600-181888000	Weak transcription	Osteobl	bone

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