Variant report

Variant	rs1829575
Chromosome Location	chr11:18287750-18287751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr11:18287326-18287882	A549	lung:	n/a	chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287603-18287617 chr11:18287602-18287618 chr11:18287603-18287617
2	STAT3	chr11:18287445-18287865	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr11:18287279-18287760	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr11:18287635-18287978	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr11:18287484-18288647	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr11:18287580-18287797	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr11:18287485-18287841	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr11:18287497-18287799	MCF10A-Er-Src	breast:	n/a	n/a
9	NR3C1	chr11:18287294-18287878	A549	lung:	n/a	chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287603-18287617 chr11:18287602-18287618 chr11:18287603-18287617
10	STAT3	chr11:18287252-18287946	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr11:18287495-18287780	HepG2	liver:	n/a	chr11:18287621-18287632 chr11:18287623-18287632 chr11:18287621-18287634
12	MYC	chr11:18287516-18287759	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr11:18287435-18287884	MCF10A-Er-Src	breast:	n/a	n/a
14	NR3C1	chr11:18287386-18287768	A549	lung:	n/a	chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287603-18287617 chr11:18287602-18287618 chr11:18287603-18287617
15	STAT3	chr11:18287446-18287867	MCF10A-Er-Src	breast:	n/a	n/a
16	NR3C1	chr11:18287345-18287793	A549	lung:	n/a	chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287602-18287618 chr11:18287603-18287617 chr11:18287602-18287618 chr11:18287603-18287617
17	FOS	chr11:18287496-18287841	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18268697..18270398-chr11:18287541..18289712,2	MCF-7	breast:

Variant related genes	Relation type
RNA5SP334	TF binding region
SAA1	TF binding region
ENSG00000134339	Chromatin interaction
ENSG00000200336	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10832913	0.91[ASN][1000 genomes]
rs11024592	0.91[ASN][1000 genomes]
rs11024594	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993373	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4609582	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4638289	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7112278	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950019	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18278400-18293200	Weak transcription	Aorta	Aorta
2	chr11:18281400-18289400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:18283600-18291000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:18283600-18301600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18285200-18287800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:18285200-18289200	Weak transcription	Hela-S3	cervix
7	chr11:18285200-18291200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:18285200-18303200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:18285400-18300600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:18285600-18289800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:18285600-18308400	Weak transcription	Gastric	stomach
12	chr11:18285800-18287800	Enhancers	GM12878-XiMat	blood
13	chr11:18285800-18298800	Weak transcription	HSMMtube	muscle
14	chr11:18286600-18287800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:18286600-18287800	Enhancers	HMEC	breast
16	chr11:18286600-18287800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:18286800-18287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:18286800-18287800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:18287000-18287800	Enhancers	NHEK	skin
20	chr11:18287200-18287800	Enhancers	Lung	lung
21	chr11:18287200-18289400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:18287400-18287800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:18287400-18287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:18287400-18289800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:18287400-18303000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:18287600-18287800	Enhancers	HSMM	muscle
27	chr11:18287600-18289200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:18287600-18289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:18287600-18298600	Weak transcription	Liver	Liver
30	chr11:18287600-18299200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:18287600-18303000	Weak transcription	Spleen	Spleen
32	chr11:18287600-18334000	Weak transcription	Right Atrium	heart

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