Variant report

Variant	rs183104668
Chromosome Location	chr16:80208510-80208511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr16:80208268-80208747	A549	lung:	n/a	n/a
2	ARID3A	chr16:80208247-80208602	HepG2	liver:	n/a	n/a
3	FOSL2	chr16:80208193-80208824	A549	lung:	n/a	n/a
4	TEAD4	chr16:80208293-80208647	A549	lung:	n/a	n/a
5	FOS	chr16:80208240-80208690	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr16:80208191-80208809	MCF-7	breast:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
7	FOS	chr16:80208302-80208682	MCF10A-Er-Src	breast:	n/a	n/a
8	TEAD4	chr16:80208210-80208852	A549	lung:	n/a	n/a
9	CEBPB	chr16:80208323-80208702	A549	lung:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
10	POLR2A	chr16:80208178-80208676	U87	brain:	n/a	n/a
11	REST	chr16:80208184-80208702	A549	lung:	n/a	n/a
12	ZBTB33	chr16:80208239-80208680	A549	lung:	n/a	n/a
13	POLR2A	chr16:80208172-80208815	U87	brain:	n/a	n/a
14	MAX	chr16:80208222-80208726	A549	lung:	n/a	n/a
15	STAT3	chr16:80208296-80208698	MCF10A-Er-Src	breast:	n/a	n/a
16	SMC3	chr16:80208466-80208589	HepG2	liver:	n/a	n/a
17	FOS	chr16:80208317-80208702	MCF10A-Er-Src	breast:	n/a	n/a
18	ZKSCAN1	chr16:80208438-80208933	Hela-S3	cervix:	n/a	n/a
19	JUND	chr16:80208357-80208618	HepG2	liver:	n/a	n/a
20	JUND	chr16:80208327-80208613	HepG2	liver:	n/a	n/a
21	MYC	chr16:80208228-80208705	MCF10A-Er-Src	breast:	n/a	n/a
22	JUN	chr16:80208284-80208642	HepG2	liver:	n/a	n/a
23	CEBPB	chr16:80208154-80208835	A549	lung:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
24	FOS	chr16:80208233-80208669	HUVEC	blood vessel:	n/a	n/a
25	CEBPB	chr16:80208350-80208684	HepG2	liver:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
26	MAX	chr16:80208142-80208792	A549	lung:	n/a	n/a
27	SP1	chr16:80208106-80208695	A549	lung:	n/a	n/a
28	STAT3	chr16:80208337-80208721	MCF10A-Er-Src	breast:	n/a	n/a
29	JUND	chr16:80208290-80208697	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr16:80208152-80208676	U87	brain:	n/a	n/a
31	EP300	chr16:80208137-80208812	A549	lung:	n/a	chr16:80208520-80208534
32	JUN	chr16:80208228-80208836	Hela-S3	cervix:	n/a	n/a
33	STAT3	chr16:80208319-80208847	MCF10A-Er-Src	breast:	n/a	n/a
34	USF1	chr16:80208138-80208662	A549	lung:	n/a	n/a
35	GATA3	chr16:80208062-80208785	A549	lung:	n/a	n/a
36	MAFK	chr16:80208340-80208652	HepG2	liver:	n/a	chr16:80208481-80208492 chr16:80208479-80208493 chr16:80208481-80208492
37	FOSL2	chr16:80208279-80208625	A549	lung:	n/a	n/a
38	STAT3	chr16:80208317-80208656	MCF10A-Er-Src	breast:	n/a	n/a
39	ATF3	chr16:80208207-80208697	A549	lung:	n/a	n/a
40	EP300	chr16:80208172-80208798	A549	lung:	n/a	chr16:80208520-80208534
41	TCF12	chr16:80208101-80208835	A549	lung:	n/a	n/a
42	MAFK	chr16:80208309-80208659	HepG2	liver:	n/a	chr16:80208481-80208492 chr16:80208479-80208493 chr16:80208481-80208492
43	MAFF	chr16:80208335-80208646	HepG2	liver:	n/a	n/a
44	EP300	chr16:80208327-80208691	Hela-S3	cervix:	n/a	chr16:80208520-80208534
45	MYC	chr16:80208363-80208596	MCF10A-Er-Src	breast:	n/a	n/a
46	CEBPB	chr16:80208270-80208736	IMR90	lung:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
47	FOSL2	chr16:80208225-80208700	MCF-7	breast:	n/a	n/a
48	CEBPB	chr16:80208275-80208762	A549	lung:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
49	CEBPB	chr16:80208244-80208745	MCF-7	breast:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532
50	CEBPB	chr16:80208311-80208727	Hela-S3	cervix:	n/a	chr16:80208521-80208532 chr16:80208519-80208532 chr16:80208519-80208532 chr16:80208519-80208530 chr16:80208521-80208532

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80208061..80210016-chr16:80210525..80213135,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261376	TF binding region
ENSG00000261376	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1064093	chr16:80208443-80333301	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv542985	chr16:80208443-80333301	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80207400-80210600	Enhancers	NHDF-Ad	bronchial
2	chr16:80207600-80210000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:80207600-80210600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr16:80207600-80212200	Enhancers	Osteobl	bone
5	chr16:80207800-80208600	Enhancers	NHLF	lung
6	chr16:80207800-80208800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr16:80207800-80210000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:80207800-80210000	Enhancers	HSMM	muscle
9	chr16:80207800-80210200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:80207800-80210200	Enhancers	HUVEC	blood vessel
11	chr16:80207800-80210200	Enhancers	NH-A	brain
12	chr16:80207800-80210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:80207800-80210400	Enhancers	HMEC	breast
14	chr16:80207800-80210400	Enhancers	HSMMtube	muscle
15	chr16:80207800-80210400	Enhancers	NHEK	skin
16	chr16:80207800-80210800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:80207800-80212200	Enhancers	A549	lung
18	chr16:80208000-80209200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:80208000-80209600	Enhancers	Hela-S3	cervix
20	chr16:80208000-80210200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr16:80208200-80208600	Enhancers	Adipose Nuclei	Adipose
22	chr16:80208400-80210400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:80208400-80210800	Enhancers	Muscle Satellite Cultured Cells	--

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