Variant report

Variant	rs1832540
Chromosome Location	chr1:225296013-225296014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1080260	0.85[EUR][1000 genomes]
rs10915779	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10915782	0.91[ASN][1000 genomes]
rs10915783	0.91[ASN][1000 genomes]
rs10915784	0.91[ASN][1000 genomes]
rs10915787	0.91[ASN][1000 genomes]
rs1110378	0.87[EUR][1000 genomes]
rs1110379	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11588063	0.88[ASN][1000 genomes]
rs12067806	0.90[ASN][1000 genomes]
rs12075556	0.87[ASN][1000 genomes]
rs12080027	0.91[ASN][1000 genomes]
rs12562045	0.87[ASN][1000 genomes]
rs12565737	0.88[ASN][1000 genomes]
rs12565929	0.91[ASN][1000 genomes]
rs12733009	0.82[EUR][1000 genomes]
rs1395116	0.83[ASN][1000 genomes]
rs1506069	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1506071	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506072	0.85[EUR][1000 genomes]
rs1506073	0.83[ASN][1000 genomes]
rs1506074	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1600531	0.91[ASN][1000 genomes]
rs1842331	0.91[ASN][1000 genomes]
rs1847908	0.88[ASN][1000 genomes]
rs1847909	0.88[ASN][1000 genomes]
rs1936631	0.86[EUR][1000 genomes]
rs2014656	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2014667	0.81[EUR][1000 genomes]
rs2128268	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2128269	0.85[ASN][1000 genomes]
rs2170109	0.88[ASN][1000 genomes]
rs2405701	0.85[ASN][1000 genomes]
rs2405702	0.91[ASN][1000 genomes]
rs2406097	0.87[EUR][1000 genomes]
rs2449256	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2449258	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2449269	0.87[EUR][1000 genomes]
rs2449281	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2449287	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2449303	0.83[ASN][1000 genomes]
rs2449304	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2449307	0.85[ASN][1000 genomes]
rs2449308	0.83[ASN][1000 genomes]
rs2449315	0.87[EUR][1000 genomes]
rs2449320	0.85[EUR][1000 genomes]
rs2449322	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2456328	0.82[ASN][1000 genomes]
rs2456336	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456341	0.82[ASN][1000 genomes]
rs2456349	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2456351	0.83[ASN][1000 genomes]
rs2489298	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489301	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2489303	0.85[EUR][1000 genomes]
rs2489311	0.87[EUR][1000 genomes]
rs2489313	0.86[EUR][1000 genomes]
rs2489314	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2489324	0.82[EUR][1000 genomes]
rs2489327	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2489337	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2489343	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2489346	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489348	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489352	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2489353	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2489355	0.80[EUR][1000 genomes]
rs2501082	0.87[EUR][1000 genomes]
rs2501083	0.87[EUR][1000 genomes]
rs2501085	0.87[EUR][1000 genomes]
rs2501086	0.83[ASN][1000 genomes]
rs2501087	0.87[EUR][1000 genomes]
rs2501099	0.84[AMR][1000 genomes]
rs2501100	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2501101	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2501107	0.83[ASN][1000 genomes]
rs2501108	0.85[ASN][1000 genomes]
rs2501110	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2501120	0.87[EUR][1000 genomes]
rs2501133	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2501147	0.85[EUR][1000 genomes]
rs2501151	0.85[EUR][1000 genomes]
rs2929626	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2939363	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101904	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3101905	0.82[ASN][1000 genomes]
rs3101906	0.88[ASN][1000 genomes]
rs3101909	0.88[ASN][1000 genomes]
rs3101910	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3101911	0.82[ASN][1000 genomes]
rs3101914	0.91[ASN][1000 genomes]
rs3101916	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101917	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3102106	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3102108	0.88[ASN][1000 genomes]
rs3102110	0.88[ASN][1000 genomes]
rs3102112	0.88[ASN][1000 genomes]
rs3102113	0.88[ASN][1000 genomes]
rs3102115	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3102116	0.88[ASN][1000 genomes]
rs3105551	0.88[ASN][1000 genomes]
rs3105552	0.88[ASN][1000 genomes]
rs3105553	0.88[ASN][1000 genomes]
rs3105554	0.88[ASN][1000 genomes]
rs3105556	0.88[ASN][1000 genomes]
rs3105558	0.88[ASN][1000 genomes]
rs3105559	0.88[ASN][1000 genomes]
rs3105560	0.86[ASN][1000 genomes]
rs3105561	0.86[ASN][1000 genomes]
rs3105562	0.87[ASN][1000 genomes]
rs3105563	0.87[ASN][1000 genomes]
rs3105564	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3105565	0.88[ASN][1000 genomes]
rs3105566	0.88[ASN][1000 genomes]
rs3105567	0.88[ASN][1000 genomes]
rs3105568	0.88[ASN][1000 genomes]
rs3105569	0.88[ASN][1000 genomes]
rs3105572	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3120987	0.89[ASN][1000 genomes]
rs3120989	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3120990	0.88[ASN][1000 genomes]
rs3120991	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3120993	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3128643	0.88[ASN][1000 genomes]
rs3128644	0.88[ASN][1000 genomes]
rs3128646	0.88[ASN][1000 genomes]
rs3128649	0.88[ASN][1000 genomes]
rs3128650	0.88[ASN][1000 genomes]
rs3128651	0.83[ASN][1000 genomes]
rs3128652	0.86[ASN][1000 genomes]
rs3128653	0.86[ASN][1000 genomes]
rs3128654	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3128655	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3128656	0.86[ASN][1000 genomes]
rs3128657	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3128658	0.88[ASN][1000 genomes]
rs3128660	0.88[ASN][1000 genomes]
rs3128662	0.86[ASN][1000 genomes]
rs3128664	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128666	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3128667	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3128668	0.82[ASN][1000 genomes]
rs3128675	0.91[ASN][1000 genomes]
rs3128676	0.91[ASN][1000 genomes]
rs55764147	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56088855	0.88[ASN][1000 genomes]
rs56339924	0.87[EUR][1000 genomes]
rs61041116	0.91[ASN][1000 genomes]
rs61211002	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61438284	0.87[EUR][1000 genomes]
rs61849768	0.87[ASN][1000 genomes]
rs6426051	0.89[EUR][1000 genomes]
rs6674717	0.90[ASN][1000 genomes]
rs6683938	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6686694	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689915	0.89[EUR][1000 genomes]
rs6697382	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6701867	0.83[ASN][1000 genomes]
rs6702733	0.89[EUR][1000 genomes]
rs7521702	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7530659	0.83[AMR][1000 genomes]
rs7545060	0.82[ASN][1000 genomes]
rs7548138	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs769296	0.90[ASN][1000 genomes]
rs9663018	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs981067	0.83[ASN][1000 genomes]
rs995613	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225275600-225312600	Weak transcription	Ovary	ovary
2	chr1:225295400-225300000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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