Variant report

Variant	rs1832846
Chromosome Location	chr1:173321769-173321770
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10399875	1.00[EUR][1000 genomes]
rs1418192	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1418193	0.85[AMR][1000 genomes]
rs2027497	0.87[AFR][1000 genomes]
rs2422342	0.85[AMR][1000 genomes]
rs4916330	1.00[EUR][1000 genomes]
rs6669012	0.85[AMR][1000 genomes]
rs6671598	0.85[AMR][1000 genomes]
rs6681901	1.00[EUR][1000 genomes]
rs947503	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv523009	chr1:173305632-173324296	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173309200-173324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
4	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
5	chr1:173321600-173322800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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