Variant report

Variant	rs183311038
Chromosome Location	chr6:80715504-80715505
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:80713236-80716364	MCF10A-Er-Src	breast:	n/a	chr6:80713962-80713969 chr6:80715312-80715321 chr6:80713962-80713969 chr6:80714200-80714210 chr6:80713962-80713969 chr6:80715314-80715323
2	JUND	chr6:80715137-80715511	HepG2	liver:	n/a	chr6:80715313-80715322
3	POLR2A	chr6:80713862-80715553	K562	blood:	n/a	n/a

Variant related genes	Relation type
TTK	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv5370	chr6:80715351-80751740	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80713200-80715600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:80713400-80715600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:80713400-80715800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:80713400-80715800	Active TSS	A549	lung
5	chr6:80713400-80717200	Active TSS	Thymus	Thymus
6	chr6:80713600-80715600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:80713600-80715600	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:80713600-80715600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:80713600-80715600	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:80713600-80716000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:80713600-80716000	Active TSS	NHLF	lung
12	chr6:80713800-80715800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:80713800-80716600	Active TSS	Fetal Thymus	thymus
14	chr6:80714000-80715600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:80714000-80715800	Active TSS	HMEC	breast
16	chr6:80714000-80716000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:80714000-80716000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:80714000-80716800	Active TSS	GM12878-XiMat	blood
19	chr6:80714600-80715600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:80714600-80715600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr6:80714600-80715600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:80714600-80715600	Flanking Active TSS	HUVEC	blood vessel
23	chr6:80714800-80715600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr6:80714800-80715600	Flanking Active TSS	Hela-S3	cervix
25	chr6:80714800-80715600	Flanking Active TSS	HSMM	muscle
26	chr6:80714800-80738800	Weak transcription	Small Intestine	intestine
27	chr6:80715000-80715600	Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr6:80715000-80715600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr6:80715000-80715600	Flanking Active TSS	HepG2	liver
30	chr6:80715000-80715600	Flanking Active TSS	NHEK	skin
31	chr6:80715000-80717400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:80715000-80718600	Weak transcription	Fetal Brain Male	brain
33	chr6:80715000-80730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:80715000-80748000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:80715000-80752200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:80715000-80752400	Weak transcription	Placenta	Placenta
37	chr6:80715200-80715600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:80715200-80715600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr6:80715200-80715600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:80715200-80715600	Active TSS	Fetal Brain Female	brain
41	chr6:80715200-80715800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:80715200-80715800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:80715200-80715800	Transcr. at gene 5' and 3'	K562	blood
44	chr6:80715200-80716000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:80715200-80716000	Active TSS	NH-A	brain
46	chr6:80715200-80718400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:80715200-80718800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:80715200-80721200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:80715200-80726000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:80715200-80727000	Weak transcription	Fetal Muscle Trunk	muscle

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