Variant report

Variant	rs183464316
Chromosome Location	chr3:23367993-23367994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1007373	chr3:23367952-23710331	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23357000-23378800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:23363200-23371000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:23363800-23371000	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:23365400-23368000	Enhancers	Primary B cells from cord blood	blood
5	chr3:23366000-23368000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:23366200-23371000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:23366400-23368000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:23366600-23372600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:23366800-23368000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:23366800-23368000	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:23366800-23368000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:23366800-23368600	Weak transcription	NHLF	lung
13	chr3:23367000-23369000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:23367000-23378800	Weak transcription	HSMMtube	muscle
15	chr3:23367200-23371000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:23367200-23373000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:23367400-23368000	Enhancers	HMEC	breast
18	chr3:23367400-23368000	Enhancers	NHEK	skin
19	chr3:23367400-23368200	Weak transcription	Brain Anterior Caudate	brain
20	chr3:23367400-23371200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:23367400-23391400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:23367600-23368000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:23367800-23368000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:23367800-23368000	Enhancers	GM12878-XiMat	blood

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