Variant report

Variant	rs1836908
Chromosome Location	chr4:96658323-96658324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10012383	0.81[ASN][1000 genomes]
rs10012443	0.88[ASN][1000 genomes]
rs10212842	0.89[ASN][1000 genomes]
rs1025630	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1117212	0.81[ASN][1000 genomes]
rs1118569	0.83[ASN][1000 genomes]
rs1118570	0.82[ASN][1000 genomes]
rs12502426	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12650006	0.80[ASN][1000 genomes]
rs12651480	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13112111	0.83[ASN][1000 genomes]
rs13112339	0.85[ASN][1000 genomes]
rs13112562	0.85[ASN][1000 genomes]
rs13136133	0.83[ASN][1000 genomes]
rs13136911	0.83[ASN][1000 genomes]
rs1370003	0.87[ASN][1000 genomes]
rs1436579	0.83[ASN][1000 genomes]
rs1436583	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1579622	0.81[ASN][1000 genomes]
rs1579623	0.81[ASN][1000 genomes]
rs1579626	0.81[ASN][1000 genomes]
rs1579627	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1595202	0.83[ASN][1000 genomes]
rs1865849	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2865468	0.82[ASN][1000 genomes]
rs2865703	0.88[ASN][1000 genomes]
rs2903012	0.81[ASN][1000 genomes]
rs3975035	0.81[ASN][1000 genomes]
rs4305518	0.82[ASN][1000 genomes]
rs4590043	0.81[ASN][1000 genomes]
rs4699275	0.81[ASN][1000 genomes]
rs6822198	0.83[ASN][1000 genomes]
rs6833840	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7654785	0.81[ASN][1000 genomes]
rs7655804	0.81[ASN][1000 genomes]
rs7672473	0.82[ASN][1000 genomes]
rs7691500	0.81[ASN][1000 genomes]
rs7691945	0.81[ASN][1000 genomes]
rs7696585	0.81[ASN][1000 genomes]
rs7698569	0.82[JPT][hapmap]
rs879310	0.89[ASN][1000 genomes]
rs879311	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs879312	0.88[ASN][1000 genomes]
rs893042	0.87[ASN][1000 genomes]
rs9762308	0.83[ASN][1000 genomes]
rs9762310	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1846406	chr4:96599084-96664321	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1843331	chr4:96619599-96664321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96651800-96660600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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