Variant report

Variant	rs1836977
Chromosome Location	chr15:34445953-34445954
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34440103..34442348-chr15:34444785..34446389,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10775222	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10851950	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11072998	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11636442	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11852537	0.84[ASN][1000 genomes]
rs11857684	0.84[ASN][1000 genomes]
rs12591181	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594077	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16958829	0.87[ASN][1000 genomes]
rs16958848	0.84[ASN][1000 genomes]
rs1836978	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2339368	0.87[ASN][1000 genomes]
rs2339369	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28538047	0.84[ASN][1000 genomes]
rs28813796	0.84[ASN][1000 genomes]
rs4780226	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57530092	0.85[ASN][1000 genomes]
rs59635553	0.85[ASN][1000 genomes]
rs60749797	0.84[ASN][1000 genomes]
rs6495580	0.85[ASN][1000 genomes]
rs7172633	0.85[ASN][1000 genomes]
rs7173244	0.84[ASN][1000 genomes]
rs7174442	0.85[ASN][1000 genomes]
rs7174586	0.84[ASN][1000 genomes]
rs7175168	0.87[ASN][1000 genomes]
rs7178203	0.85[ASN][1000 genomes]
rs73376164	0.90[ASN][1000 genomes]
rs73378128	0.85[ASN][1000 genomes]
rs73378138	0.85[ASN][1000 genomes]
rs73378141	0.82[ASN][1000 genomes]
rs7497840	0.83[ASN][1000 genomes]
rs7497951	0.84[ASN][1000 genomes]
rs8025406	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8025730	0.88[ASN][1000 genomes]
rs8028932	0.85[ASN][1000 genomes]
rs8028950	0.85[ASN][1000 genomes]
rs8031102	0.88[ASN][1000 genomes]
rs8035493	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8040732	0.88[ASN][1000 genomes]
rs8040861	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9920654	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
3	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
4	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:34430200-34446000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:34430600-34446600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:34431000-34446200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:34431000-34446400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:34431200-34446400	Weak transcription	K562	blood
12	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:34431400-34446000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:34431400-34446800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:34432000-34446400	Weak transcription	Brain Substantia Nigra	brain
16	chr15:34432800-34446400	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:34433000-34446600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:34433000-34446800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:34433200-34448200	Weak transcription	Gastric	stomach
20	chr15:34433400-34446400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:34434200-34446200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:34434200-34446400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:34434400-34446400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:34434400-34450200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr15:34434600-34446600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:34435000-34446400	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr15:34435800-34453000	Weak transcription	Stomach Mucosa	stomach
30	chr15:34437200-34446800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr15:34437200-34449600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr15:34437400-34446400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:34437600-34446800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:34438000-34446400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr15:34438000-34446600	Weak transcription	Hela-S3	cervix
36	chr15:34438200-34447000	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:34438400-34446400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:34438400-34447000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:34438400-34453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:34438800-34446200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr15:34439000-34446200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:34439000-34454600	Weak transcription	Brain Angular Gyrus	brain
43	chr15:34439400-34446800	Weak transcription	HepG2	liver
44	chr15:34439600-34446400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:34439800-34446400	Strong transcription	Liver	Liver
46	chr15:34439800-34446800	Strong transcription	Fetal Muscle Leg	muscle
47	chr15:34440000-34446400	Strong transcription	NH-A	brain
48	chr15:34440000-34448400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:34440400-34446000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:34440600-34446200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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