Variant report

Variant	rs1837974
Chromosome Location	chr11:57122945-57122946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57120084..57121849-chr11:57122754..57124895,2	K562	blood:
2	chr11:57122494..57124859-chr11:57128292..57131148,2	K562	blood:
3	chr11:57107096..57109188-chr11:57121507..57123782,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10732882	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10736683	0.91[ASN][1000 genomes]
rs10750859	0.91[ASN][1000 genomes]
rs10896609	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10896610	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896611	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2003065	0.94[ASN][1000 genomes]
rs2013314	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2155234	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2276038	0.86[EUR][1000 genomes]
rs2276039	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2276040	0.86[EUR][1000 genomes]
rs2276041	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2276042	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781899	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781900	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781901	0.91[ASN][1000 genomes]
rs3781902	0.91[ASN][1000 genomes]
rs4570598	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4939138	0.88[ASN][1000 genomes]
rs4939140	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4939141	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55637147	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55741081	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55756513	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56077100	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59455760	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60931171	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72923914	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs879646	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs894450	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9667065	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117600-57126400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
3	chr11:57119400-57123600	Weak transcription	A549	lung
4	chr11:57119800-57124800	Enhancers	Fetal Brain Male	brain
5	chr11:57120000-57126600	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:57120000-57126800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:57120200-57123400	Enhancers	Fetal Brain Female	brain
8	chr11:57120200-57123400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:57121000-57124400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:57121200-57126400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:57121400-57123000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:57121400-57126400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:57121600-57126200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:57122000-57126000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:57122000-57127200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:57122200-57125200	Weak transcription	K562	blood
17	chr11:57122600-57123800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:57122600-57125200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:57122600-57126600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:57122600-57126600	Weak transcription	Pancreas	Pancrea
21	chr11:57122600-57127200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:57122600-57127400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:57122800-57123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:57122800-57126200	Weak transcription	Fetal Muscle Trunk	muscle

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