The 2.0 version of rSNPBase
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Variant report
Variant
rs183799498
Chromosome Location
chr1:71110720-71110721
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-PTGER3-2
chr1:71110666-71110727
XLOC_000868
No data
No data
No data
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv871024
chr1:71088106-71169865
Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
6 gene(s)
inside rSNPs
diseases
2
nsv871703
chr1:71093805-71127061
Enhancers Weak transcription Bivalent Enhancer Active TSS
TF binding regionChromatin interactive regionlncRNA
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links