Variant report
| Variant | rs1839319 |
|---|---|
| Chromosome Location | chr18:24395124-24395125 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1058427 | 1.00[ASN][1000 genomes] |
| rs11659207 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11661147 | 1.00[ASN][1000 genomes] |
| rs11661256 | 1.00[ASN][1000 genomes] |
| rs11662880 | 1.00[ASN][1000 genomes] |
| rs11665087 | 1.00[ASN][1000 genomes] |
| rs12963250 | 1.00[ASN][1000 genomes] |
| rs12968026 | 1.00[ASN][1000 genomes] |
| rs12970160 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1595254 | 1.00[ASN][1000 genomes] |
| rs16942763 | 1.00[ASN][1000 genomes] |
| rs16942806 | 1.00[ASN][1000 genomes] |
| rs16942835 | 1.00[ASN][1000 genomes] |
| rs16958776 | 1.00[ASN][1000 genomes] |
| rs17614110 | 1.00[ASN][1000 genomes] |
| rs17684326 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34775621 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35531875 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs548220 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66950491 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66985226 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67207056 | 1.00[ASN][1000 genomes] |
| rs67384004 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67461489 | 1.00[ASN][1000 genomes] |
| rs68036122 | 1.00[ASN][1000 genomes] |
| rs71352701 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs71353404 | 1.00[ASN][1000 genomes] |
| rs72878776 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761995 | chr18:24214286-24502570 | Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:24394000-24395400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
