Variant report

Variant	rs1840058
Chromosome Location	chr4:86720508-86720509
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12643379	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452676	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400759	0.82[CEU][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
3	chr4:86709200-86727000	Weak transcription	HSMM	muscle
4	chr4:86713200-86726400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86718000-86721800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:86718200-86728400	Weak transcription	Left Ventricle	heart
7	chr4:86718200-86733800	Weak transcription	Gastric	stomach
8	chr4:86718600-86720600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:86719000-86722400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:86719000-86727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:86719400-86730800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:86719600-86727200	Weak transcription	Adipose Nuclei	Adipose
13	chr4:86719800-86720800	Weak transcription	NHDF-Ad	bronchial
14	chr4:86719800-86721200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86720400-86721200	Enhancers	HUVEC	blood vessel
16	chr4:86720400-86721400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:86720400-86727200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links