Variant report
| Variant | rs1842674 |
|---|---|
| Chromosome Location | chr11:56058197-56058198 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1002773 | 0.90[EUR][1000 genomes] |
| rs10896159 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10896271 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs10896272 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap] |
| rs10896333 | 0.83[EUR][1000 genomes] |
| rs11227719 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11228071 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11228165 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap] |
| rs11228166 | 0.81[CHB][hapmap] |
| rs1156808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11600863 | 0.84[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1351534 | 0.84[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1573511 | 0.90[EUR][1000 genomes] |
| rs17150286 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17150411 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap] |
| rs1894026 | 0.90[EUR][1000 genomes] |
| rs1945232 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4939044 | 0.89[EUR][1000 genomes] |
| rs57377676 | 0.81[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7126993 | 0.90[EUR][1000 genomes] |
| rs7481663 | 0.90[EUR][1000 genomes] |
| rs998544 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv975114 | chr11:55751535-56124251 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044859 | chr11:55900482-56121727 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv1050024 | chr11:55900482-56518943 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 52 gene(s) | inside rSNPs | diseases |
| 4 | nsv497854 | chr11:55917298-56537994 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 50 gene(s) | inside rSNPs | diseases |
| 5 | nsv832161 | chr11:56046173-56166964 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:56055600-56058200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 2 | chr11:56058000-56058200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
