Variant report

Variant	rs1843786
Chromosome Location	chr3:78884724-78884725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11127634	0.84[ASN][1000 genomes]
rs12330466	0.94[YRI][hapmap]
rs12330828	0.89[YRI][hapmap]
rs1383407	0.81[CEU][hapmap]
rs1480687	0.88[CEU][hapmap]
rs1480688	0.88[CEU][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap]
rs1487139	0.95[JPT][hapmap]
rs162870	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs1840969	0.95[JPT][hapmap]
rs28629289	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs333491	0.95[JPT][hapmap]
rs333495	0.95[JPT][hapmap]
rs416551	0.95[JPT][hapmap]
rs439325	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs444598	0.89[CHB][hapmap]
rs510006	0.89[CHB][hapmap]
rs7640421	0.83[YRI][hapmap]
rs9309819	0.80[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9309820	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs9835958	0.92[CEU][hapmap];0.89[TSI][hapmap]
rs9837982	0.88[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9840011	0.83[YRI][hapmap]
rs9841731	0.94[YRI][hapmap]
rs9861264	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9863758	0.85[YRI][hapmap]
rs9873248	0.92[ASN][1000 genomes]
rs9877603	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9881587	0.88[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78873200-78888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:78875600-78888800	Weak transcription	Fetal Lung	lung
3	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:78882600-78885200	Enhancers	HepG2	liver
5	chr3:78883400-78888800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:78883600-78888800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:78884400-78884800	Enhancers	NHDF-Ad	bronchial
8	chr3:78884600-78888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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