Variant report

Variant	rs184508577
Chromosome Location	chr1:91790995-91790996
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:91790961-91791051	IMR90	lung:	n/a	n/a
2	MAFK	chr1:91790908-91791083	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:91790980..91792779-chr1:91870013..91871774,2	K562	blood:

Variant related genes	Relation type
FEN1P1	TF binding region
ENSG00000162669	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1800676	chr1:91722083-91854389	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1796351	chr1:91722083-91872374	Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1006022	chr1:91768640-91831196	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv871685	chr1:91774458-91849219	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv546806	chr1:91780408-91875505	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv437904	chr1:91790876-91801207	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91772800-91793800	Weak transcription	Left Ventricle	heart
2	chr1:91773600-91796200	Weak transcription	Fetal Kidney	kidney
3	chr1:91774800-91794400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:91775000-91793800	Weak transcription	Pancreas	Pancrea
5	chr1:91775200-91794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:91776600-91793800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:91777600-91794000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:91777800-91794600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:91778000-91793800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:91778000-91794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:91778000-91794000	Weak transcription	Fetal Intestine Small	intestine
12	chr1:91778600-91793800	Weak transcription	Ovary	ovary
13	chr1:91779000-91793800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:91782600-91804800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:91786200-91795000	Weak transcription	Psoas Muscle	Psoas
16	chr1:91788200-91793800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:91788400-91810800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:91788800-91795800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:91789000-91794000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:91790000-91793800	Weak transcription	Spleen	Spleen
21	chr1:91790400-91791000	Strong transcription	Fetal Stomach	stomach
22	chr1:91790600-91791000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:91790600-91791200	Strong transcription	Brain Germinal Matrix	brain
24	chr1:91790600-91791200	Strong transcription	Fetal Lung	lung
25	chr1:91790600-91791200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr1:91790600-91791200	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:91790600-91791400	Strong transcription	Fetal Brain Female	brain
28	chr1:91790800-91791000	ZNF genes & repeats	Aorta	Aorta
29	chr1:91790800-91791200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:91790800-91791200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:91790800-91791200	Enhancers	HMEC	breast
32	chr1:91790800-91791400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr1:91790800-91793600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links