Variant report

Variant	rs1845563
Chromosome Location	chr5:116651075-116651076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10070521	0.81[EUR][1000 genomes]
rs10074665	0.81[EUR][1000 genomes]
rs10477560	0.83[EUR][1000 genomes]
rs10478340	0.83[EUR][1000 genomes]
rs10478341	0.82[EUR][1000 genomes]
rs10478342	0.87[EUR][1000 genomes]
rs1494827	0.83[EUR][1000 genomes]
rs1494828	0.83[EUR][1000 genomes]
rs1845562	0.83[EUR][1000 genomes]
rs1908407	0.83[EUR][1000 genomes]
rs1979732	0.94[EUR][1000 genomes]
rs2220859	0.83[EUR][1000 genomes]
rs2416466	0.83[EUR][1000 genomes]
rs34479127	0.82[EUR][1000 genomes]
rs4580811	0.88[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7708893	0.87[EUR][1000 genomes]
rs7711973	0.94[EUR][1000 genomes]
rs7716765	0.84[EUR][1000 genomes]
rs7737236	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116650800-116651400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links