Variant report

Variant	rs1846228
Chromosome Location	chr1:216807520-216807521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10779269	0.81[JPT][hapmap]
rs1391512	0.81[JPT][hapmap]
rs1419243	0.82[JPT][hapmap]
rs1419244	0.87[JPT][hapmap]
rs1498277	0.82[JPT][hapmap]
rs1498282	0.81[JPT][hapmap]
rs1537810	0.82[JPT][hapmap]
rs1817998	0.82[JPT][hapmap]
rs1819770	0.86[JPT][hapmap]
rs1826977	0.82[JPT][hapmap]
rs2173374	0.82[JPT][hapmap]
rs4846609	0.81[YRI][hapmap]
rs6673703	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv873178	chr1:216714314-216813244	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216775200-216835400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
3	chr1:216792400-216809000	Weak transcription	Gastric	stomach
4	chr1:216800000-216826200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:216800200-216826600	Weak transcription	Left Ventricle	heart
6	chr1:216804200-216807800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:216804800-216808000	Weak transcription	Brain Germinal Matrix	brain
8	chr1:216804800-216809000	Weak transcription	Fetal Heart	heart
9	chr1:216805600-216812000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:216806200-216808200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:216806600-216809000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:216806600-216815800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:216806800-216807600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:216806800-216810400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:216807200-216807600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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