Variant report

Variant	rs184725578
Chromosome Location	chr11:71694454-71694455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71637727..71640735-chr11:71691994..71694781,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254469	Chromatin interaction
ENSG00000137522	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	esv3386957	chr11:71694375-71694745	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71660400-71701200	Weak transcription	Gastric	stomach
2	chr11:71660800-71709400	Weak transcription	Stomach Mucosa	stomach
3	chr11:71661000-71709600	Weak transcription	Small Intestine	intestine
4	chr11:71663000-71698000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:71668800-71699000	Weak transcription	Right Ventricle	heart
6	chr11:71670600-71701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:71672200-71698800	Weak transcription	NHEK	skin
8	chr11:71672200-71701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:71672200-71715200	Weak transcription	Fetal Brain Male	brain
10	chr11:71672400-71701000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:71672400-71709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:71672600-71694600	Weak transcription	Esophagus	oesophagus
13	chr11:71672600-71698400	Weak transcription	Spleen	Spleen
14	chr11:71672600-71709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:71672800-71694600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:71673000-71697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:71673000-71698800	Weak transcription	Ovary	ovary
18	chr11:71673000-71701200	Weak transcription	Pancreas	Pancrea
19	chr11:71673200-71694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:71673600-71698800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:71673600-71710800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:71673800-71698000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:71673800-71698400	Weak transcription	NHLF	lung
24	chr11:71673800-71701200	Weak transcription	Colonic Mucosa	Colon
25	chr11:71673800-71701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:71673800-71707800	Weak transcription	Fetal Heart	heart
27	chr11:71674000-71710600	Weak transcription	Brain Germinal Matrix	brain
28	chr11:71674200-71697400	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:71675000-71701200	Weak transcription	Fetal Brain Female	brain
30	chr11:71677000-71709400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:71677200-71736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:71678000-71710600	Weak transcription	HMEC	breast
33	chr11:71681000-71698000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:71681200-71709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr11:71681600-71694800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:71681600-71698600	Weak transcription	Placenta	Placenta
37	chr11:71681600-71698800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:71681800-71694600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:71682000-71696200	Weak transcription	Fetal Kidney	kidney
40	chr11:71684000-71695000	Weak transcription	Psoas Muscle	Psoas
41	chr11:71684000-71697800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:71684200-71709000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr11:71685800-71698600	Strong transcription	K562	blood
44	chr11:71687000-71694600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:71687000-71698400	Weak transcription	NHDF-Ad	bronchial
46	chr11:71687800-71703000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:71688600-71703200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:71688800-71694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:71688800-71698200	Strong transcription	A549	lung
50	chr11:71689000-71701200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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