Variant report

Variant	rs1851057
Chromosome Location	chr3:34726168-34726169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11129598	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs13074645	0.81[AMR][1000 genomes]
rs1420513	0.84[AMR][1000 genomes]
rs1520634	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1520641	0.93[AMR][1000 genomes]
rs1520644	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1520646	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1520647	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1581334	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1582351	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1894935	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2080425	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2160468	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2167041	0.86[AMR][1000 genomes]
rs2167042	0.86[AMR][1000 genomes]
rs2336653	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2884476	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4678695	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4678701	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6550287	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6550288	0.85[EUR][1000 genomes]
rs6550289	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6798617	0.81[AMR][1000 genomes]
rs6799184	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6803249	0.83[EUR][1000 genomes]
rs7614078	0.93[AMR][1000 genomes]
rs7624722	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7625714	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7625770	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7629903	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7636733	0.85[EUR][1000 genomes]
rs918085	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3518503	chr3:34720759-34728145	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3518504	chr3:34720759-34728145	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34722200-34734400	Weak transcription	Thymus	Thymus
2	chr3:34725400-34729000	Weak transcription	Fetal Intestine Large	intestine

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