Variant report

Variant	rs185125006
Chromosome Location	chr5:97977200-97977201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv969927	chr5:97976395-97980335	Enhancers Weak transcription Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97972000-97977600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:97972000-97977600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:97974600-97977200	Weak transcription	HSMMtube	muscle
4	chr5:97974600-97977400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:97974800-97979200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:97975000-97979000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:97975400-97977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:97975400-97977400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:97975400-97977400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:97975400-97977600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:97975600-97977400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:97976800-97977200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:97976800-97979400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:97976800-97979400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:97977000-97977800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:97977000-97978200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:97977200-97977800	Enhancers	HSMMtube	muscle
18	chr5:97977200-97978000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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