Variant report

Variant	rs1851399
Chromosome Location	chr4:129179586-129179587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11098953	0.88[ASN][1000 genomes]
rs11098954	0.88[ASN][1000 genomes]
rs11728141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733374	0.96[EUR][1000 genomes]
rs12650034	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103317	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13103695	0.96[EUR][1000 genomes]
rs1391980	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1403125	0.96[EUR][1000 genomes]
rs1522432	0.96[EUR][1000 genomes]
rs1829726	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1851400	0.96[EUR][1000 genomes]
rs2036687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101808	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202805	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391257	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609279	0.88[ASN][1000 genomes]
rs290004	0.83[ASN][1000 genomes]
rs34174952	0.96[EUR][1000 genomes]
rs34837036	0.84[ASN][1000 genomes]
rs3755896	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430431	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4624668	0.96[EUR][1000 genomes]
rs4975180	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4975220	0.96[EUR][1000 genomes]
rs4975299	0.87[ASN][1000 genomes]
rs62318161	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6814132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6816625	0.88[ASN][1000 genomes]
rs6842987	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849992	0.88[ASN][1000 genomes]
rs7666566	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679633	0.96[EUR][1000 genomes]
rs7691103	0.96[EUR][1000 genomes]
rs9790593	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129173800-129207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129178600-129190000	Weak transcription	NHDF-Ad	bronchial
3	chr4:129179200-129179600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:129179200-129179600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr4:129179200-129179800	Enhancers	Placenta	Placenta
6	chr4:129179400-129179600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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