Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11127742	0.87[EUR][1000 genomes]
rs11711024	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11715625	0.91[EUR][1000 genomes]
rs12152272	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062741	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13073613	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075250	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079104	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13091492	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13092157	0.86[EUR][1000 genomes]
rs1464790	0.85[EUR][1000 genomes]
rs1464791	0.84[EUR][1000 genomes]
rs1524557	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019299	0.82[EUR][1000 genomes]
rs2873054	0.83[EUR][1000 genomes]
rs6765917	0.83[EUR][1000 genomes]
rs6792696	0.92[EUR][1000 genomes]
rs6804587	0.92[EUR][1000 genomes]
rs6809528	0.85[EUR][1000 genomes]
rs7631052	0.84[EUR][1000 genomes]
rs7641973	0.84[EUR][1000 genomes]
rs7648245	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9841087	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas
2	chr3:81891600-81895800	Weak transcription	Dnd41	blood
3	chr3:81894800-81896000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search: