Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1007512	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10493552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10493553	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11162201	0.83[EUR][1000 genomes]
rs11162250	0.86[EUR][1000 genomes]
rs11162302	0.88[EUR][1000 genomes]
rs11162315	0.88[EUR][1000 genomes]
rs11162360	0.91[EUR][1000 genomes]
rs11162513	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11162567	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs12021751	0.88[EUR][1000 genomes]
rs12036667	0.91[ASN][1000 genomes]
rs12041465	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12563445	0.92[ASN][1000 genomes]
rs12565272	0.89[ASN][1000 genomes]
rs1335095	0.88[EUR][1000 genomes]
rs1413991	0.86[EUR][1000 genomes]
rs1526504	0.91[ASN][1000 genomes]
rs1526505	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1526507	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526513	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17096272	0.92[ASN][1000 genomes]
rs17096289	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs4559444	0.83[EUR][1000 genomes]
rs4949725	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685645	0.91[EUR][1000 genomes]
rs7520936	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs941032	0.90[JPT][hapmap]
rs9787288	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508293	chr1:75491417-75541615	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75534000-75539400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:75537600-75539000	Weak transcription	H1 Cell Line	embryonic stem cell

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