Variant report
Variant | rs1854149 |
---|---|
Chromosome Location | chr1:71240366-71240367 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:71240165..71242218-chr1:71510173..71512188,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1327452 | 0.92[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs1327462 | 0.86[AFR][1000 genomes];0.94[EUR][1000 genomes] |
rs1409979 | 0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1409980 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1409986 | 0.85[EUR][1000 genomes] |
rs1414069 | 0.84[EUR][1000 genomes] |
rs1591385 | 0.98[EUR][1000 genomes] |
rs2209747 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2225110 | 0.84[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs2257713 | 0.92[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs2258725 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs2782785 | 0.96[EUR][1000 genomes] |
rs3120156 | 0.96[EUR][1000 genomes] |
rs3131375 | 0.89[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs6424406 | 0.90[EUR][1000 genomes] |
rs7515193 | 0.92[AFR][1000 genomes];0.94[EUR][1000 genomes] |
rs7525012 | 0.92[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs7551638 | 0.89[AFR][1000 genomes];0.96[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3452322 | chr1:71237020-71240689 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
2 | esv3452319 | chr1:71237194-71240416 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | esv3452323 | chr1:71237208-71240443 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | esv3452321 | chr1:71237251-71240423 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:71238800-71243400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |