Variant report

Variant	rs1855480
Chromosome Location	chr13:87699547-87699548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1568547	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568548	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568549	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17614422	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2343150	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2880547	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6650324	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7328367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7328552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74103440	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002837	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs884093	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9301931	0.91[AFR][1000 genomes]
rs9301944	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9301956	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9301980	0.88[EUR][1000 genomes]
rs9301982	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9301984	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9301985	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9301986	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516349	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516375	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9516432	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516433	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516435	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516446	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516447	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516471	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516472	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9523907	0.88[EUR][1000 genomes]
rs9524349	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9524507	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524533	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524534	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524535	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524536	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524539	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524571	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524572	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524574	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524576	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9524579	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9584182	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9584183	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046278	chr13:87461244-87712231	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1044991	chr13:87461244-87713936	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832671	chr13:87539345-87707707	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv428607	chr13:87633567-87766875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87690000-87702200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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