Variant report

Variant	rs1858481
Chromosome Location	chr1:152302040-152302041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152297812..152299892-chr1:152301033..152302777,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10494273	1.00[CHD][hapmap]
rs10749668	1.00[MEX][hapmap]
rs11204983	1.00[EUR][1000 genomes]
rs12057680	1.00[EUR][1000 genomes]
rs12060296	1.00[EUR][1000 genomes]
rs12066296	1.00[EUR][1000 genomes]
rs12067755	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12078392	1.00[EUR][1000 genomes]
rs12079093	1.00[TSI][hapmap]
rs12083959	1.00[EUR][1000 genomes]
rs1337343	1.00[MEX][hapmap]
rs13375665	0.83[ASN][1000 genomes]
rs1390489	0.85[CHD][hapmap];1.00[MEX][hapmap]
rs16833865	1.00[EUR][1000 genomes]
rs16833867	1.00[CHD][hapmap]
rs16833870	1.00[EUR][1000 genomes]
rs16833876	1.00[EUR][1000 genomes]
rs16833966	1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs16834012	0.83[ASN][1000 genomes]
rs16834174	1.00[EUR][1000 genomes]
rs17359691	0.83[ASN][1000 genomes]
rs2036101	0.83[ASW][hapmap]
rs28655434	1.00[EUR][1000 genomes]
rs3120654	1.00[EUR][1000 genomes]
rs3120655	0.83[AMR][1000 genomes]
rs3120656	0.91[AMR][1000 genomes]
rs3126065	0.94[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap]
rs3126066	0.89[YRI][hapmap]
rs3126082	0.91[AMR][1000 genomes]
rs3126087	1.00[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3126090	0.82[ASW][hapmap];0.84[LWK][hapmap];0.90[MKK][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3126093	0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134871	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134872	0.94[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[AMR][1000 genomes]
rs3134873	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41363352	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs56024264	1.00[EUR][1000 genomes]
rs56106510	1.00[EUR][1000 genomes]
rs56124007	1.00[EUR][1000 genomes]
rs56156422	1.00[EUR][1000 genomes]
rs56244386	1.00[EUR][1000 genomes]
rs566973	1.00[EUR][1000 genomes]
rs57272962	1.00[EUR][1000 genomes]
rs57934636	1.00[EUR][1000 genomes]
rs58132665	1.00[EUR][1000 genomes]
rs58788896	1.00[EUR][1000 genomes]
rs58823849	1.00[EUR][1000 genomes]
rs58935238	1.00[EUR][1000 genomes]
rs60095860	1.00[EUR][1000 genomes]
rs60179982	1.00[EUR][1000 genomes]
rs60525930	1.00[EUR][1000 genomes]
rs60709044	1.00[EUR][1000 genomes]
rs61230786	1.00[EUR][1000 genomes]
rs6587655	0.83[ASW][hapmap]
rs6695861	1.00[MEX][hapmap]
rs72477395	0.83[ASN][1000 genomes]
rs73003080	1.00[EUR][1000 genomes]
rs73004841	1.00[EUR][1000 genomes]
rs73004845	1.00[EUR][1000 genomes]
rs73004848	1.00[EUR][1000 genomes]
rs73004856	1.00[EUR][1000 genomes]
rs73004882	1.00[EUR][1000 genomes]
rs73004888	1.00[EUR][1000 genomes]
rs73006958	1.00[EUR][1000 genomes]
rs73006962	1.00[EUR][1000 genomes]
rs733439	1.00[EUR][1000 genomes]
rs7354940	0.83[ASN][1000 genomes]
rs74126341	1.00[EUR][1000 genomes]
rs74126343	1.00[EUR][1000 genomes]
rs74127703	1.00[EUR][1000 genomes]
rs74127885	1.00[EUR][1000 genomes]
rs74127887	1.00[EUR][1000 genomes]
rs74127894	1.00[EUR][1000 genomes]
rs74127895	1.00[EUR][1000 genomes]
rs74127917	1.00[EUR][1000 genomes]
rs74127918	1.00[EUR][1000 genomes]
rs74129414	1.00[EUR][1000 genomes]
rs74129429	1.00[EUR][1000 genomes]
rs74129447	1.00[EUR][1000 genomes]
rs74129458	1.00[EUR][1000 genomes]
rs74129459	1.00[EUR][1000 genomes]
rs74129463	1.00[EUR][1000 genomes]
rs74129464	1.00[EUR][1000 genomes]
rs74129466	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv998298	chr1:152288685-152319877	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152286600-152322200	Weak transcription	Ovary	ovary
2	chr1:152300000-152303800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:152301000-152302200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:152301000-152302200	Enhancers	HMEC	breast
5	chr1:152301200-152302400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:152302000-152309600	Weak transcription	Aorta	Aorta

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