Variant report

Variant	rs1859091
Chromosome Location	chr11:17503307-17503308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10741728	0.80[EUR][1000 genomes]
rs1076204	0.81[EUR][1000 genomes]
rs10766404	0.80[EUR][1000 genomes]
rs10766405	0.80[EUR][1000 genomes]
rs10766406	0.80[EUR][1000 genomes]
rs10832795	0.81[EUR][1000 genomes]
rs2072230	0.88[EUR][1000 genomes]
rs2188966	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3758949	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4757521	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757523	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17501600-17503800	Weak transcription	Pancreas	Pancrea
2	chr11:17501600-17505800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:17501600-17506200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:17501600-17507600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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