Variant report

Variant	rs1860407
Chromosome Location	chr10:119136488-119136489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr10:119134693-119136554	PBDE	blood:	n/a	chr10:119135979-119135992

No.	Distal block	Cell Line	Cell type
1	chr10:119136010..119137605-chr10:119137941..119139672,2	K562	blood:
2	chr10:119135075..119137421-chr10:119139743..119143361,4	K562	blood:
3	chr10:119136362..119138041-chr10:119146326..119148907,2	K562	blood:
4	chr10:119135075..119137612-chr10:119151953..119153760,2	K562	blood:
5	chr10:119135318..119137458-chr10:119181859..119184416,2	K562	blood:

Variant related genes	Relation type
PDZD8	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10082478	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10787767	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10787771	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10787772	0.86[AMR][1000 genomes]
rs10886058	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10886061	0.82[ASN][1000 genomes]
rs10886062	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10886064	0.82[ASN][1000 genomes]
rs11197960	0.82[ASN][1000 genomes]
rs11197968	0.82[ASN][1000 genomes]
rs11197969	0.82[ASN][1000 genomes]
rs11197970	0.82[ASN][1000 genomes]
rs11197974	0.84[ASN][1000 genomes]
rs11197975	0.85[ASN][1000 genomes]
rs11197976	0.85[ASN][1000 genomes]
rs11197977	0.83[ASN][1000 genomes]
rs11197981	0.83[ASN][1000 genomes]
rs11197983	0.85[AMR][1000 genomes]
rs11197985	0.85[AMR][1000 genomes]
rs12243133	0.83[ASN][1000 genomes]
rs12243628	0.82[ASN][1000 genomes]
rs12243925	0.83[AMR][1000 genomes]
rs12256994	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12260782	0.85[AMR][1000 genomes]
rs12263512	0.82[ASN][1000 genomes]
rs12265713	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12269460	0.82[ASN][1000 genomes]
rs12413507	0.80[ASN][1000 genomes]
rs12414644	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569963	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12571779	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12572369	0.86[AMR][1000 genomes]
rs12573009	0.80[ASN][1000 genomes]
rs1468563	0.82[ASN][1000 genomes]
rs1935166	0.82[ASN][1000 genomes]
rs1935167	0.82[ASN][1000 genomes]
rs2153714	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2255321	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2255367	0.80[ASN][1000 genomes]
rs2275670	0.85[ASN][1000 genomes]
rs2420457	0.84[ASN][1000 genomes]
rs2429505	0.80[ASN][1000 genomes]
rs2532789	0.80[ASN][1000 genomes]
rs2532792	0.80[ASN][1000 genomes]
rs2532793	0.80[ASN][1000 genomes]
rs2532795	0.80[ASN][1000 genomes]
rs2532796	0.80[ASN][1000 genomes]
rs2532809	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2532844	0.80[ASN][1000 genomes]
rs2794416	0.80[ASN][1000 genomes]
rs2901123	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34247425	0.82[ASN][1000 genomes]
rs363227	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363228	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363229	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363238	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363271	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363272	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363303	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3814229	0.84[ASN][1000 genomes]
rs3814230	0.84[ASN][1000 genomes]
rs4751623	0.82[ASN][1000 genomes]
rs4752048	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752054	0.82[ASN][1000 genomes]
rs4752055	0.86[AMR][1000 genomes]
rs4752056	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6585431	0.80[ASN][1000 genomes]
rs7070594	0.85[ASN][1000 genomes]
rs7072027	0.82[ASN][1000 genomes]
rs7072785	0.82[ASN][1000 genomes]
rs7086651	0.85[ASN][1000 genomes]
rs7088401	0.82[ASN][1000 genomes]
rs72825515	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72825530	0.80[ASN][1000 genomes]
rs72825561	0.85[AMR][1000 genomes]
rs7901203	0.82[ASN][1000 genomes]
rs887341	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979992	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1860407	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119136200-119136600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:119136200-119136800	Enhancers	K562	blood
3	chr10:119136200-119138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:119136200-119138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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