Variant report

Variant	rs186208192
Chromosome Location	chr1:93189186-93189187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	esv3340706	chr1:93187980-93207933	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93213400	Weak transcription	Gastric	stomach
3	chr1:93155800-93213400	Weak transcription	Lung	lung
4	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
7	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
10	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:93177800-93197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:93181800-93196600	Weak transcription	HepG2	liver
14	chr1:93182600-93200000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:93185400-93194200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:93186600-93205600	Weak transcription	Ovary	ovary
17	chr1:93186800-93197800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:93186800-93213400	Weak transcription	K562	blood
19	chr1:93187600-93190400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:93188000-93190200	Weak transcription	Fetal Intestine Large	intestine
21	chr1:93188400-93202000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:93188400-93205400	Weak transcription	Small Intestine	intestine
23	chr1:93188600-93192400	Weak transcription	Fetal Kidney	kidney
24	chr1:93188600-93199200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:93188600-93203800	Weak transcription	HMEC	breast
26	chr1:93188800-93191000	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr1:93188800-93201000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:93189000-93197800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:93189000-93203800	Weak transcription	Hela-S3	cervix
30	chr1:93189000-93213400	Weak transcription	Fetal Lung	lung

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